View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_21 (Length: 467)
Name: NF0526_low_21
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 10588446 - 10588869
Alignment:
| Q |
16 |
atcaaacaccttgaaagtcttcaaaagatcactttctaactcttcaatctcagcatcaccaccatcaccatttttgtgattcaatatggagtcataaaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10588446 |
atcaaacaccttgaaagtcttcaaaagatcactttctaactcttcaatctcagcatcaccaccatcaccatttttgtgattcaatatggagtcataaaag |
10588545 |
T |
|
| Q |
116 |
cacaagaactcactcaagtttagactcttctttcccactagatattcaagctcctctatgctatacttgaaacctgttctcactaacaattgattcagct |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10588546 |
cacaagaactcactcaagtttagactcttctttcccactagatattcaagctcctctatgctatacttgaaacccgttctcactaacaattgattcagct |
10588645 |
T |
|
| Q |
216 |
cttcaagggttaaaattccatcactatttatgtctagtttctcaaaaatcagctccaattcattggtggttaggggacacatattggcaagattctccac |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10588646 |
cttcaagggttaaaattccatcactatttatgtctagtttctcaaaaatcagctccaattcattggtggttaggggacacatattggcaagattctccac |
10588745 |
T |
|
| Q |
316 |
agatgcacatgtataaatactcatgtgtaaggtgtgaattaattgcacataacatatgtagggacaacagaacacttgtatatcctaataacaataaagt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
10588746 |
agatgcacatgtataaatactcatgtgtaaggtgtgaattaattgcacataacatatgtagggaccacagaacacttgtataccctaataacaataaagt |
10588845 |
T |
|
| Q |
416 |
ctggaactttctagtgtatttgat |
439 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
10588846 |
ctggaactttctagtgtatttgat |
10588869 |
T |
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