View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_22 (Length: 459)
Name: NF0526_low_22
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 313 - 420
Target Start/End: Original strand, 6916896 - 6917003
Alignment:
| Q |
313 |
cagacacaaaactaagaaatctataccaataataattttcgaaaatgaaatatccgtgtcagaattacatagatctgaaaccgaaaatcatgttattaaa |
412 |
Q |
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| T |
6916896 |
cagacacgaaactaacaaatctataccaataataattttggaaaatgaaatatccgtgtcagaattacatagatctgaaaccgaaaatcatgttattaaa |
6916995 |
T |
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| Q |
413 |
catacata |
420 |
Q |
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|||||||| |
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| T |
6916996 |
catacata |
6917003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 19315818 - 19315854
Alignment:
| Q |
107 |
attattacatcattttctcaaattattatcggtgttg |
143 |
Q |
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| T |
19315818 |
attattatatcattttctcaaattattgtcggtgttg |
19315854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 147
Target Start/End: Original strand, 18919055 - 18919086
Alignment:
| Q |
116 |
tcattttctcaaattattatcggtgttgacat |
147 |
Q |
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| T |
18919055 |
tcattttctcaaattattatcggtgttgacat |
18919086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 18570998 - 18570968
Alignment:
| Q |
116 |
tcattttctcaaattattatcggtgttgaca |
146 |
Q |
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| T |
18570998 |
tcattttctcaaattattatcggtgttgaca |
18570968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 28890034 - 28889993
Alignment:
| Q |
157 |
tgttgtgtctggtgtccatgtatgagtctgtgtttcataggt |
198 |
Q |
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| T |
28890034 |
tgttgggtctggtgtccatgtatgtgtcagtgtttcataggt |
28889993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 28713806 - 28713777
Alignment:
| Q |
117 |
cattttctcaaattattatcggtgttgaca |
146 |
Q |
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| T |
28713806 |
cattttctcaaattattatcggtgttgaca |
28713777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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