View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_23 (Length: 452)
Name: NF0526_low_23
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 16683885 - 16683581
Alignment:
| Q |
11 |
cacagaaatttctccagaaactaggatgtattgttatatctgtttcctccggattcgaatgccttagtctcgttggccatggtggtgcatgcccctttga |
110 |
Q |
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| T |
16683885 |
cacagaaatttctccggaaactaggatgtattgttacatctgtttcctccggattcgaatgccttagtctcgttggccatggtggtgcatgcccctttga |
16683786 |
T |
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| Q |
111 |
agttgttcttttggaccttcacttgcctgatttagatggatttgaagttaccgcaaggatccggaagtccaaaagccgtaactggcctatcgttgttgct |
210 |
Q |
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| T |
16683785 |
agttgttattttggaccttcacttgcctgatttagatggatttgaagttactgcaaggatccggaagtccaaaagccgtaactggcctatcgctgttgct |
16683686 |
T |
|
| Q |
211 |
ttatcggcaagctcagaagaagaattaagggaaaaatgtatgcatattgggtttaatggagttatccgaaagccctagctgttgcaaggattcacggaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
16683685 |
ttatcggcaagctcagaagaagaattaagggaaaaatgtatgcatattgggtttaatggagttatccgaaagccgattctgttgcaaggattcgcggaag |
16683586 |
T |
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| Q |
311 |
aactc |
315 |
Q |
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| T |
16683585 |
aactc |
16683581 |
T |
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