View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_29 (Length: 415)
Name: NF0526_low_29
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 25328095 - 25328500
Alignment:
| Q |
1 |
tgccattccaatatcatagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatca |
100 |
Q |
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| T |
25328095 |
tgccattccaatatcatagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatca |
25328194 |
T |
|
| Q |
101 |
gcatatgatgtgaaatctttcctgcaagcacacatatatagatatgttaaccataataaaaccctttcttaattttgtctatttgtcatttatttcaatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| |
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| T |
25328195 |
acatatgatgtgaaatctttcctgcaagcacacatatatagatatgttaaccataataaaactctttgttaattttgtgtatttgtcatttatttcaatc |
25328294 |
T |
|
| Q |
201 |
tattacaatatggaaactcaaatagaaatttaaagtatgggaaagttttggtaccatacacaannnnnnngctaacccatccttcatactcatcctcaag |
300 |
Q |
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| T |
25328295 |
tattacaatatggaaactcaaatagaaatttaaagtatgggaaagttttggtaccatacacaatttttttgctaacccatccttcatactcatcctcaag |
25328394 |
T |
|
| Q |
301 |
tgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattcctagaaaatgaaatatattagagcatcgtttaagtgtcaatcaaactctaaag |
400 |
Q |
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| T |
25328395 |
tgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattcctagaaaatgaaatatattagagcatcgtttaagtgtcaatcaaactctaaag |
25328494 |
T |
|
| Q |
401 |
aataat |
406 |
Q |
| |
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|||||| |
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| T |
25328495 |
aataat |
25328500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 25322239 - 25322354
Alignment:
| Q |
8 |
ccaatatcatagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatg |
107 |
Q |
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|||| |||||| ||| ||| ||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||| |||||| |
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| T |
25322239 |
ccaagatcataaccaaacaatgcatacacattgccctcattcaccgtagtccaatacttaactctatcgccaaattctttgaagcacacatcaacatatg |
25322338 |
T |
|
| Q |
108 |
atgtgaaatctttcct |
123 |
Q |
| |
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|||||||||||||| |
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| T |
25322339 |
cagtgaaatctttcct |
25322354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 25322609 - 25322686
Alignment:
| Q |
273 |
taacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
350 |
Q |
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| T |
25322609 |
taacccatcctccatattcatcctcaagtttttgtggtagatcccaatgatgtaatgtaacatgtggttggattccta |
25322686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 5219264 - 5219358
Alignment:
| Q |
33 |
acacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatgtgaaatctttcctgcaa |
127 |
Q |
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||||||| ||||||| || |||||||||| ||||||| ||| ||||| ||||| ||||| ||||| ||||||| |||||||||||| |||||| |
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| T |
5219264 |
acacattcccctcatttactgtggtccaatgtttaactctatccccaaactctctaaagcatacatctgcatatgctgtgaaatcttttctgcaa |
5219358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 5219785 - 5219863
Alignment:
| Q |
272 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
350 |
Q |
| |
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|||||||||||| |||| ||||| ||||||| ||||||||||||||||| | || |||||||||| || |||||||| |
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| T |
5219785 |
ctaacccatcctccatattcatcttcaagtgcttgtggtagatcccagtgatttaaagtaacatgtggttggattccta |
5219863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 39641993 - 39641915
Alignment:
| Q |
272 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
350 |
Q |
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|||| |||||||||||| ||||||||||||| |||||| ||||| ||| ||| | ||| ||||||| || |||||||| |
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| T |
39641993 |
ctaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattccta |
39641915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 349
Target Start/End: Complemental strand, 29122350 - 29122273
Alignment:
| Q |
272 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattcct |
349 |
Q |
| |
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|||| |||||||||||| ||||||||||||| |||||| ||||| ||| ||| | ||| ||||||| || ||||||| |
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| T |
29122350 |
ctaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcct |
29122273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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