View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_32 (Length: 405)
Name: NF0526_low_32
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 97 - 393
Target Start/End: Original strand, 1383733 - 1384029
Alignment:
| Q |
97 |
taaactgcatgcaggtgagaaaacaatataccttgctttgtatcaacttcttaacttgtttggattgagttattttagtttatctaatgacattgaactt |
196 |
Q |
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| T |
1383733 |
taaactgcatgcaggtgagaaaacaatataccttgctttgtatcaacttcttaacttgtttggattgagttattttagtttatctaatgacattgaactt |
1383832 |
T |
|
| Q |
197 |
atgagactacttgagagagcttatgaaaacaatttatgctcataaaatattttcagcttatttccatatgacatgttactctttattattcacttatact |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383833 |
atgagactacttgagagagcttatgaaaacaatttatgctcataaaatattttcagcttatttccatatgacatgttactctttattattcacttatact |
1383932 |
T |
|
| Q |
297 |
acaaaattgagagatccttgttaggatctcaatttattatattaatgcttttgcatgtcttttttcattagatttaaaaacgtatatgttgcatatt |
393 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383933 |
acaaaattgagagatccttgttatgatctcaatttattatattaatgcttttgcatgtcttttttcattagatttaaaaacgtatatgttgcatatt |
1384029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 97 - 393
Target Start/End: Original strand, 1389838 - 1390134
Alignment:
| Q |
97 |
taaactgcatgcaggtgagaaaacaatataccttgctttgtatcaacttcttaacttgtttggattgagttattttagtttatctaatgacattgaactt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1389838 |
taaactgcatgcaggtgagaaaacaatataccttgctttgtatcaacttcttaacttgtttggattgagttattttagtttatctaatgacattgaactt |
1389937 |
T |
|
| Q |
197 |
atgagactacttgagagagcttatgaaaacaatttatgctcataaaatattttcagcttatttccatatgacatgttactctttattattcacttatact |
296 |
Q |
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| T |
1389938 |
atgagactacttgagagagcttatgaaaacaatttatgctcataaaatattttcagcttatttccatatgacatgttactctttattattcacttatact |
1390037 |
T |
|
| Q |
297 |
acaaaattgagagatccttgttaggatctcaatttattatattaatgcttttgcatgtcttttttcattagatttaaaaacgtatatgttgcatatt |
393 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390038 |
acaaaattgagagatccttgttatgatctcaatttattatattaatgcttttgcatgtcttttttcattagatttaaaaacgtatatgttgcatatt |
1390134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 30496809 - 30496781
Alignment:
| Q |
199 |
gagactacttgagagagcttatgaaaaca |
227 |
Q |
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| T |
30496809 |
gagactacttgagagagcttatgaaaaca |
30496781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 33197179 - 33197248
Alignment:
| Q |
152 |
ttgtttggattgagttattttagtttatctaatgacattga-acttatgagactacttgagagagcttat |
220 |
Q |
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||||||||||||| |||||| |||||||| | ||||||||| |||| |||||||| ||||||||| |||| |
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| T |
33197179 |
ttgtttggattgacttatttgagtttatcaactgacattgatacttgtgagactatttgagagaggttat |
33197248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 25699130 - 25699187
Alignment:
| Q |
166 |
ttattttagtttatctaatgacatt-gaacttatgagactacttgagagagcttatga |
222 |
Q |
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|||||| |||||||||| |||||| | |||||||||||| ||||||||||||||||| |
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| T |
25699130 |
ttatttgagtttatctattgacataagcacttatgagacttcttgagagagcttatga |
25699187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 40880867 - 40880949
Alignment:
| Q |
153 |
tgtttggattgagttattttagtttatctaatgacattgaactta--tgagactacttgagagagcttatgaaaacaatttatg |
234 |
Q |
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|||||||||||| |||||| || ||||||| ||| || |||| || ||||||| |||||||||||||||||||||| ||||| |
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| T |
40880867 |
tgtttggattgacttatttaagcttatctattgaaat-gaacatacgtgagactgtttgagagagcttatgaaaacaacttatg |
40880949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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