View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_33 (Length: 399)
Name: NF0526_low_33
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 370
Target Start/End: Original strand, 25222665 - 25223046
Alignment:
| Q |
4 |
ggagtagcataggatctcactaaggtgcactaccatgcccctatctaggaggaataccaccaggctgagcagcatcacgaggaggttcagcctgagcggc |
103 |
Q |
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||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25222665 |
ggagtagtacaggatctcactaaggcgcactaccatgcccctatctaggaggaataccaccaggctgagcagcatcacgaggaggttcagcctgagtggc |
25222764 |
T |
|
| Q |
104 |
atcatgcaccacacccccaccatcacttgatgcctttatcaggggacctgattatctatctctattgccaccattcgctaatcatgtagcttacatgatt |
203 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
25222765 |
atcatgcaccacacccccaccaccacttgatgcctttatcaggggacctgattatctatctctattgccaccattcgct-atcatgttgcttacatgatt |
25222863 |
T |
|
| Q |
204 |
tagaattatgttgatgtaagtataatgtttaggttggttaatatatttataactcattgtg----------------tttttcatcgtttattttgccgt |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
25222864 |
tagaattatgttgatgtaagtataatgtttaggttggttaatatatttataactcattgtgttttattgttattaaatttttcatcgtttatttttccgc |
25222963 |
T |
|
| Q |
288 |
aattacattacttcatcattcaaatgttcattttggttaatatatttttaactgtgtttgnnnnnnngtatttaatagtcaca |
370 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |
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| T |
25222964 |
aattacattactttatcattcaaatgttcattttggttaatatatttttaattgtttttgtttttttgtatttaatagtcaca |
25223046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 7082881 - 7082924
Alignment:
| Q |
294 |
attacttcatcattcaaatgttcattttggttaatatattttta |
337 |
Q |
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| T |
7082881 |
attactttatcattcaaatgtttattttggttaatatattttta |
7082924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 51 - 269
Target Start/End: Complemental strand, 8351633 - 8351415
Alignment:
| Q |
51 |
ggaggaataccaccaggctgagcagcatcacgaggaggttcagcctgagcggcatcatgcaccacacccccaccatcacttgatgcctttatcaggggac |
150 |
Q |
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|||||| ||| ||||||||||| |||||||||||||||||||||||||||| || | ||| | || |||||||| || |||||| |||| ||||||| |
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| T |
8351633 |
ggaggagtacaaccaggctgagaagcatcacgaggaggttcagcctgagcgacacgacgcatcgcagccccaccaccaactgatgcttttactaggggac |
8351534 |
T |
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| Q |
151 |
ctgattatctatctctattgccaccattcgctaatcatgtagcttacatgatttagaattatgttgatgtaagtataatgtttaggttggttaatatatt |
250 |
Q |
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|||| || ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8351533 |
atgatgataggtctctattgccgccattctctaatcatgttgcttacatgatttagaattatgttgatgtaagtataatgtttaatttggttaatatatt |
8351434 |
T |
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| Q |
251 |
tataactcattgtgttttt |
269 |
Q |
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| ||||||||| ||||||| |
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| T |
8351433 |
tctaactcattatgttttt |
8351415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 8351394 - 8351328
Alignment:
| Q |
274 |
gtttattttgccgtaattacattacttcatcattcaaatgttcattttggttaatatatttttaact |
340 |
Q |
| |
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||||||||| || |||||| ||||||| |||||||||||||||||||| ||||||||||||| |||| |
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| T |
8351394 |
gtttatttttccctaattatattactttatcattcaaatgttcattttcgttaatatattttcaact |
8351328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 40409245 - 40409293
Alignment:
| Q |
287 |
taattacattacttcatcattcaaatgttcattttggttaatatatttt |
335 |
Q |
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|||||| ||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
40409245 |
taattatattactttatcattcaaatgtttattttggttaatatatttt |
40409293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Complemental strand, 34349851 - 34349804
Alignment:
| Q |
178 |
tcgctaatcatgtagcttacatgatttagaattatgttgatgtaagta |
225 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| | ||||||||||||| |
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| T |
34349851 |
tcgctaatcatgttgcttacatgatttggaatgacgttgatgtaagta |
34349804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 16781894 - 16781940
Alignment:
| Q |
293 |
cattacttcatcattcaaatgttcattttggttaatatatttttaac |
339 |
Q |
| |
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|||||||| ||| |||||||||| ||||| ||||||||||||||||| |
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| T |
16781894 |
cattactttatcgttcaaatgtttatttttgttaatatatttttaac |
16781940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 13814770 - 13814714
Alignment:
| Q |
173 |
accattcgctaatcatgtagcttacatgatttagaattatgttgatgtaagtataat |
229 |
Q |
| |
|
||||||| |||||||||| | ||||| ||||| ||||||||||| ||||||||||| |
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| T |
13814770 |
accattcactaatcatgttgtttacaagatttgaaattatgttgaagtaagtataat |
13814714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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