View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_35 (Length: 385)
Name: NF0526_low_35
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 34291857 - 34292228
Alignment:
| Q |
1 |
atgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34291857 |
atgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccgccacattcctttgcaacctcttttgctattggattgat |
34291956 |
T |
|
| Q |
101 |
atcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccata |
200 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291957 |
atcatttctatctacaacttcccctcacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccata |
34292056 |
T |
|
| Q |
201 |
ttttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatccc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292057 |
ttttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatccc |
34292156 |
T |
|
| Q |
301 |
acacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatggctcttc |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34292157 |
acacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaattgcatggctcttc |
34292228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 34566352 - 34566711
Alignment:
| Q |
1 |
atgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgat |
100 |
Q |
| |
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|||| |||||||||||||| || ||||||||||||| |||| |||||||||| || |||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
34566352 |
atgccgacttcccttcattacttagtgctcttccaactgtcacaattgcaagaggcaagccaccacattcctttgcaacctcacttgctattgggttgat |
34566451 |
T |
|
| Q |
101 |
atcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccata |
200 |
Q |
| |
|
||| | | ||||||||| | | ||||||| ||||||||| ||||||||||| |||||||| ||||| || ||||||||||| | || ||||||| |
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| T |
34566452 |
atcatatgtatctacaattccacctgacatctctcgaaatagataccaagcctcatcctccgacaacacagaaacttgaaaattcacattgcatcccaag |
34566551 |
T |
|
| Q |
201 |
ttttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatccc |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34566552 |
tttttgcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatccc |
34566651 |
T |
|
| Q |
301 |
acacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34566652 |
acacatcatcaaggacaattagaacctttttatcttttctcatcagtctctcatgtaatt |
34566711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 34371825 - 34371746
Alignment:
| Q |
24 |
agtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgatatc |
103 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| || || |||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
34371825 |
agtgctcgtccaactgttgcaattgcaaggggcaaaccaccacattcccttgcaacctcacttgctattggattgatatc |
34371746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 34554723 - 34554776
Alignment:
| Q |
43 |
caattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggat |
96 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||||||||| | |||||||||||||| |
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| T |
34554723 |
caatagcaagaggcaagcctccacattcctttgcaacttgttttgctattggat |
34554776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 15896042 - 15896342
Alignment:
| Q |
1 |
atgcagacttcccttcattgctcagtgctcttccaattgtcgcaattgcaagcggtaagccaccacattcctttgcaacctcttttgctattggattgat |
100 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| |||| |||||||||| || |||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
15896042 |
atgcagacttcccttcaatgcttagtgctcttccaactgtcacaattgcaaggggcaagccaccacatgcctttgcaacctctcttgctattggattgat |
15896141 |
T |
|
| Q |
101 |
atcttttctatctacaacttcccctgacagctctcgaaacagataccaagcttcatcctctttcaacagaggtacttgaaaattgagttttcatcccata |
200 |
Q |
| |
|
||| | | | | |||||| || |||| || ||| |||| || ||||||||||||||| ||| | ||| ||||||||||| | | | ||||||||| |
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| T |
15896142 |
atcatgtttgtttacaacatctcctgccatttcttgaaataggctccaagcttcatcctccgacaatacagggacttgaaaattcactctgcatcccata |
15896241 |
T |
|
| Q |
201 |
ttttggcacactttttcatcccgtgatgtgagcaatattttgcaatatttctcatgttctagataaggaagtccaatacactcaaagtctagaatatccc |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||| |||||| || |||||||||| |
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|
| T |
15896242 |
ttttggcacactttttgatcccgtgatgtgaacaatattttgcaatatttatcacgttct------tgaagtccaatacgctcaaaatcaagaatatccc |
15896335 |
T |
|
| Q |
301 |
acacatc |
307 |
Q |
| |
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||||||| |
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|
| T |
15896336 |
acacatc |
15896342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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