View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_37 (Length: 379)
Name: NF0526_low_37
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_37 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 43435477 - 43435132
Alignment:
| Q |
1 |
tataagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43435477 |
tataagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactatctcgaagctctttcataaccct |
43435378 |
T |
|
| Q |
101 |
aatcatgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccatatcatcccaatcagaccttgaaataatgccaaccacctttttg |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43435377 |
aatcacgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccttatcatcccaatcagaccctgaaataatgccaaccaccttttta |
43435278 |
T |
|
| Q |
201 |
acaacattccgcattgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctccctttttaaactcgtcgaaa |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||| || ||| |||||| ||||||| ||| | ||||||||| |||| ||| |||| |
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| T |
43435277 |
acaacattctgcattgcattttgctcaagcatccctttatagaaatgtgaaagtgcaacaatatcactcttcaaattctcccttttcaaacccgtagaaa |
43435178 |
T |
|
| Q |
301 |
tcgtcaaatgtgtctcttcatctaaatagaaccctttatccatcat |
346 |
Q |
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||||||||| ||||||||||||||||| |||||||| ||| |||| |
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| T |
43435177 |
tcgtcaaatacgtctcttcatctaaataaaaccctttttccttcat |
43435132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 43426972 - 43426639
Alignment:
| Q |
1 |
tataagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccct |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||| |
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| T |
43426972 |
tataagtcactgtattctgtagataaccagattgctttccaacccaatgaaaaaacttataagcctttaaaggactatttcgaagctctttcataaccct |
43426873 |
T |
|
| Q |
101 |
aatcatgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccatatcatcccaatcagaccttgaaataatgccaaccacctttttg |
200 |
Q |
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||||| |||||| |||||||| ||||||||||||||||| ||||||||||||| | || ||||||||||||| ||||||||| ||||||||||||||| |
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| T |
43426872 |
aatcacgaaattgtccgaaagttgaattttaaccttctcgagttcattctcaatctcattgtcccaatcagaccctgaaataataccaaccacctttttg |
43426773 |
T |
|
| Q |
201 |
acaacattccgcattgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctccctttttaaactcgtcgaaa |
300 |
Q |
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|||||| || ||||||||| |||||||||||||||||||| || || | | |||||||||||||| || || | || |||| ||| | ||||| |
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| T |
43426772 |
acaacactctgcattgcatcctgctcaagcatccctttatagaaacgtgaatactcaacaacatcactcttcatcttcgcctttttcaaatctgccgaaa |
43426673 |
T |
|
| Q |
301 |
tcgtcaaatgtgtctcttcatctaaatagaaccc |
334 |
Q |
| |
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||||||||||||||||||||||||| ||||| |
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| T |
43426672 |
gtatcaaatgtgtctcttcatctaaataaaaccc |
43426639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 43443671 - 43443558
Alignment:
| Q |
1 |
tataagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43443671 |
tataagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactatctcgaagctctttcataaccct |
43443572 |
T |
|
| Q |
101 |
aatcatgaaattat |
114 |
Q |
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||||| |||||||| |
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| T |
43443571 |
aatcacgaaattat |
43443558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 43422392 - 43422275
Alignment:
| Q |
3 |
taagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccctaa |
102 |
Q |
| |
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|||||||| | ||| ||||||||||||||||||||||||||||||| |||||| || ||| ||||||| |||| |||||||||||||| ||||| | |
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| T |
43422392 |
taagtcacagcattatgttgataaccagattgcttcccaacccaataaaaaaagttgtaaccctttaaaggacaacttcgaagctctttcaaaacccgta |
43422293 |
T |
|
| Q |
103 |
tcatgaaattatccgaaa |
120 |
Q |
| |
|
||| ||| ||||||||| |
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| T |
43422292 |
tcacaaaactatccgaaa |
43422275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 20957 - 20624
Alignment:
| Q |
1 |
tataagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggactttctcgaagctctttcataaccct |
100 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
20957 |
tataagtaactgtattccgttgataactagatttctttccaacccaatgaaaaaacttataagcctttaaaggactatctcgaagctctttcatgaccct |
20858 |
T |
|
| Q |
101 |
aatcatgaaattatccgaaagctgaattttaaccttctccagttcattctcaaccatatcatcccaatcagaccttgaaataatgccaaccacctttttg |
200 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||||||||| |
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| T |
20857 |
aatcacgaaattatccgaaag---aattttaaccttctccagttcattctcaaccttatcatcccaatcagacccttaagtaatgccaaccacctttttg |
20761 |
T |
|
| Q |
201 |
acaacattccgcattgcattttgctcaagcatccctttataacaatatggaagcacaacaacatcactccacaactcctccctttttaaactcgtcgaaa |
300 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||| || ||| || |||| |||||||||||||| ||||| ||||| |||||||||| | |||| |
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| T |
20760 |
acaacattctgcattgcattctgctcaagcatccctttgtagaaatgtgaaagcgcaacaacatcactcttcaacttctccccttttaaactccttgaaa |
20661 |
T |
|
| Q |
301 |
tcgtcaaatgtgtctcttcatctaaatagaacccttt |
337 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
20660 |
tcgtcacatgtgtctcttcatctaaatagaacccttt |
20624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 40186324 - 40186396
Alignment:
| Q |
3 |
taagtcactgtattctgttgataaccagattgcttcccaacccaatgaaaaaacttataagcctttaagggac |
75 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
40186324 |
taagtcacggtattatgttgataaccagattgcttcccaacccaatgaaaaaacttgtaagcctttaaaggac |
40186396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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