View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_4 (Length: 699)

Name: NF0526_low_4
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_4
NF0526_low_4
[»] chr5 (6 HSPs)
chr5 (1-659)||(41722692-41723349)
chr5 (1-471)||(41718154-41718623)
chr5 (1-237)||(34352226-34352461)
chr5 (1-237)||(34359934-34360169)
chr5 (1-237)||(29585404-29585640)
chr5 (463-659)||(34359471-34359667)
[»] chr4 (15 HSPs)
chr4 (1-305)||(48701925-48702228)
chr4 (6-305)||(48697241-48697539)
chr4 (1-235)||(42265883-42266116)
chr4 (1-235)||(42270602-42270835)
chr4 (1-236)||(24520129-24520363)
chr4 (464-659)||(48697661-48697856)
chr4 (3-305)||(30945582-30945901)
chr4 (3-305)||(30950288-30950607)
chr4 (464-659)||(30946023-30946218)
chr4 (454-659)||(42270185-42270390)
chr4 (1-188)||(10427315-10427493)
chr4 (28-105)||(48782850-48782925)
chr4 (21-149)||(1979253-1979375)
chr4 (557-651)||(2003173-2003267)
chr4 (328-421)||(48781266-48781360)
[»] chr2 (14 HSPs)
chr2 (1-305)||(5198759-5199062)
chr2 (462-659)||(829761-829958)
chr2 (1-186)||(15602905-15603090)
chr2 (462-651)||(28715361-28715550)
chr2 (21-164)||(28715816-28715955)
chr2 (461-654)||(13840763-13840960)
chr2 (110-194)||(830205-830291)
chr2 (110-194)||(825549-825635)
chr2 (6-60)||(825632-825686)
chr2 (1-188)||(30397013-30397191)
chr2 (6-60)||(830288-830342)
chr2 (7-119)||(8004167-8004278)
chr2 (24-117)||(13843921-13844014)
chr2 (50-119)||(13840387-13840456)
[»] chr6 (17 HSPs)
chr6 (3-235)||(27874096-27874327)
chr6 (1-237)||(26976235-26976470)
chr6 (1-236)||(1234680-1234914)
chr6 (1-305)||(27878813-27879134)
chr6 (451-659)||(26976720-26976928)
chr6 (454-659)||(27874539-27874744)
chr6 (466-659)||(18967350-18967543)
chr6 (6-172)||(30986552-30986716)
chr6 (8-185)||(30966683-30966858)
chr6 (1-188)||(18967912-18968090)
chr6 (463-579)||(21966493-21966604)
chr6 (7-88)||(21966677-21966758)
chr6 (463-523)||(30968569-30968629)
chr6 (557-651)||(1472398-1472492)
chr6 (461-498)||(1472341-1472378)
chr6 (17-65)||(23012619-23012667)
chr6 (597-653)||(21965669-21965725)
[»] chr3 (12 HSPs)
chr3 (1-237)||(5818617-5818852)
chr3 (1-236)||(5823379-5823613)
chr3 (1-194)||(54545902-54546097)
chr3 (3-305)||(2817368-2817658)
chr3 (454-659)||(54545427-54545632)
chr3 (451-659)||(5819102-5819310)
chr3 (50-188)||(24671173-24671301)
chr3 (34-92)||(35977103-35977161)
chr3 (1-50)||(24659240-24659287)
chr3 (63-188)||(4579126-4579241)
chr3 (4-83)||(31204872-31204950)
chr3 (461-498)||(42589352-42589389)
[»] chr8 (5 HSPs)
chr8 (1-236)||(9439476-9439710)
chr8 (1-236)||(9444196-9444430)
chr8 (454-659)||(9439921-9440126)
chr8 (461-498)||(24594367-24594404)
chr8 (557-651)||(24594424-24594518)
[»] scaffold0074 (2 HSPs)
scaffold0074 (466-659)||(27877-28070)
scaffold0074 (1-188)||(27330-27508)
[»] chr7 (9 HSPs)
chr7 (466-659)||(2323956-2324149)
chr7 (6-194)||(30235038-30235230)
chr7 (1-188)||(16183735-16183913)
chr7 (1-83)||(8138563-8138645)
chr7 (1-119)||(8140067-8140183)
chr7 (459-659)||(22510199-22510398)
chr7 (557-651)||(7504696-7504790)
chr7 (461-498)||(7504639-7504676)
chr7 (7-55)||(5102701-5102749)
[»] chr1 (5 HSPs)
chr1 (1-188)||(46191266-46191444)
chr1 (1-83)||(30697218-30697300)
chr1 (3-83)||(4130215-4130296)
chr1 (464-565)||(41413422-41413523)
chr1 (39-119)||(30674787-30674865)


Alignment Details
Target: chr5 (Bit Score: 623; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Complemental strand, 41723349 - 41722692
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  41723349 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 41723250  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  41723249 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 41723151  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723150 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 41723051  T
Q  301 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaaca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41723050 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaaca 41722951  T
Q  401 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722950 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagc 41722851  T
Q  501 ttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41722850 ttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgt 41722751  T
Q  601 cattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 659  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722750 cattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 41722692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 41718623 - 41718154
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  41718623 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 41718524  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  41718523 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 41718425  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718424 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 41718325  T
Q  301 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaaca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41718324 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaaca 41718225  T
Q  401 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718224 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34352461 - 34352226
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34352461 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 34352362  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34352361 cttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaag 34352263  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  34352262 ctttacttgttcttgtgttgttactgatttgggatga 34352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34360169 - 34359934
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34360169 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 34360070  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34360069 cttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaag 34359971  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  34359970 ctttacttgttcttgtgttgttactgatttgggatga 34359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 29585404 - 29585640
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  29585404 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctct 29585503  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  29585504 cttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctagacaag 29585603  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatga 237  Q
    ||||||||||| |||||||||||||||||||||||||    
T  29585604 ctttacttgttgttgtgttgttactgatttgggatga 29585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 463 - 659
Target Start/End: Complemental strand, 34359667 - 34359471
Alignment:
Q  463 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 562  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34359667 atgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 34359568  T
Q  563 cgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 659  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||    
T  34359567 cgacaccatataaacttgtcagcgttgatcggctttgtcattacatccgctaggttatcattggtgtgaatcttttgcatatccacgcttccctcct 34359471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 48701925 - 48702228
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  48701925 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 48702024  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  48702025 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 48702123  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || ||    
T  48702124 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgca 48702223  T
Q  301 tttat 305  Q
    |||||    
T  48702224 tttat 48702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 48697241 - 48697539
Alignment:
Q  6 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  48697241 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttat 48697340  T
Q  106 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta 205  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  48697341 aaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttta 48697439  T
Q  206 cttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 305  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  48697440 cttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 48697539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42266116 - 42265883
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266116 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 42266017  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||    
T  42266016 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaag 42265918  T
Q  201 ctttacttgttcttgtgttgttactgatttgggat 235  Q
    |||||||||||||||||||||||||||||||||||    
T  42265917 ctttacttgttcttgtgttgttactgatttgggat 42265883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42270835 - 42270602
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270835 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 42270736  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||    
T  42270735 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaag 42270637  T
Q  201 ctttacttgttcttgtgttgttactgatttgggat 235  Q
    |||||||||||||||||||||||||||||||||||    
T  42270636 ctttacttgttcttgtgttgttactgatttgggat 42270602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 24520129 - 24520363
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24520129 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 24520228  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  24520229 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 24520327  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatg 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  24520328 ctttacttgttcttgtgttgttactgatttgggatg 24520363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 464 - 659
Target Start/End: Original strand, 48697661 - 48697856
Alignment:
Q  464 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 563  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  48697661 tgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttgccgacttcggttgctacgtttccaataggccatacgaggatc 48697760  T
Q  564 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 659  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697761 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 48697856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 3 - 305
Target Start/End: Original strand, 30945582 - 30945901
Alignment:
Q  3 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 102  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30945582 gggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctct 30945681  T
Q  103 tataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta-----a 195  Q
    |||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |    
T  30945682 tataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaaga 30945781  T
Q  196 acaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatg 285  Q
    ||||         |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || |||||||    
T  30945782 acaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatg 30945881  T
Q  286 cctcaaccattttcatttat 305  Q
    || |||||| || |||||||    
T  30945882 ccccaaccaattgcatttat 30945901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 3 - 305
Target Start/End: Original strand, 30950288 - 30950607
Alignment:
Q  3 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  30950288 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctctct 30950387  T
Q  103 tataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta-----a 195  Q
    |||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |    
T  30950388 tataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaaga 30950487  T
Q  196 acaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatg 285  Q
    ||||         |  |||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || |||||||    
T  30950488 acaagtagttgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatg 30950587  T
Q  286 cctcaaccattttcatttat 305  Q
    || |||||| || |||||||    
T  30950588 ccccaaccaattgcatttat 30950607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 464 - 659
Target Start/End: Original strand, 30946023 - 30946218
Alignment:
Q  464 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 563  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||    
T  30946023 tgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttaccgacttcggttgctacgtttccaataggccatacgaggatc 30946122  T
Q  564 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 659  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946123 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 30946218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 454 - 659
Target Start/End: Complemental strand, 42270390 - 42270185
Alignment:
Q  454 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  42270390 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 42270291  T
Q  554 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 653  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  42270290 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 42270191  T
Q  654 cctcct 659  Q
    | ||||    
T  42270190 cttcct 42270185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 10427493 - 10427315
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctc 99  Q
    |||||||||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||| |||||    
T  10427493 aggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctctc 10427395  T
Q  100 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 188  Q
    ||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  10427394 tctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 10427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 48782925 - 48782850
Alignment:
Q  28 gagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 105  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||| |  |||||||||||||||||||||||||    
T  48782925 gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
Q  21 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 120  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  |||| ||||||| ||| | |||||||||||||||||||| ||||||||       
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- 1979281  T
Q  121 aactaacacaaactaggagaaacctcaca 149  Q
     |||| ||| ||| |||||||||||||||    
T  1979280 -actagcactaaccaggagaaacctcaca 1979253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 651
Target Start/End: Complemental strand, 2003267 - 2003173
Alignment:
Q  557 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 651  Q
    |||||||||||||||  ||| || |||   ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  2003267 gaggatcgacaccatgtaaatttgtcaacattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacact 2003173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 421
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
Q  328 gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa 421  Q
    ||||||||||||||||||| ||| |  ||||| ||||| | |||| ||||| |||||  ||||||| ||||||||  | |||||||||||||||||    
T  48781360 gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa 48781266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 5198759 - 5199062
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  5198759 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 5198858  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  5198859 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 5198957  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || ||    
T  5198958 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgca 5199057  T
Q  301 tttat 305  Q
    |||||    
T  5199058 tttat 5199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 462 - 659
Target Start/End: Complemental strand, 829958 - 829761
Alignment:
Q  462 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 561  Q
    |||||||||||| ||||||||||||  |||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  829958 catgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttgccaactccagttgctatgtttccaataggccatacgagga 829859  T
Q  562 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 659  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||    
T  829858 tcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttccttcct 829761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 15603090 - 15602905
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||| ||| |    
T  15603090 aggggaaaaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctat 15602991  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca 186  Q
    ||| ||||||||||||||| |||||||||  |||| ||||||||||| || | || ||||||||||| ||||||||||| ||||||    
T  15602990 cttgtaaataggagaatactaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca 15602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 462 - 651
Target Start/End: Complemental strand, 28715550 - 28715361
Alignment:
Q  462 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 561  Q
    |||||||||||||||||||||||||  || ||| | ||  | |||||||||||||||| ||||||| | |||||||| ||| |||||||||||| |||||    
T  28715550 catgttcacaatctcccacttaaagctacattttttagaattcaaaatctctctacctcgccaacttccgttgctacattttcaataggccatatgagga 28715451  T
Q  562 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 651  Q
    ||||||| ||| |||||| ||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||    
T  28715450 tcgacactatagaaacttgtcagcattgatcgactttgtcattacatctgctaggttatcattggtgtgaatcttatgcatattcacact 28715361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 28715955 - 28715816
Alignment:
Q  21 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaataca 120  Q
    |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||  | || |||||||||||||||       
T  28715955 aagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctataaataggagaat--- 28715859  T
Q  121 aactaacacaaactaggagaaacctcacaggagaaactaatttt 164  Q
     |||||||| | ||||||||||||| ||| ||||||||| ||||    
T  28715858 -actaacactacctaggagaaaccttacaagagaaactattttt 28715816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 461 - 654
Target Start/End: Original strand, 13840763 - 13840960
Alignment:
Q  461 acatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacg--- 557  Q
    ||||||| |||||||| ||||||||   ||||||||||||||| ||||| ||||| ||||||||||||  ||||||| |||||||||||| |||||        
T  13840763 acatgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttgccaactcttgttgctatgtttccaataggtcatacttcc 13840862  T
Q  558 -aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttcc 654  Q
     ||||||||| |||||||||||||| ||  |||||||| |||||||  ||||| | ||| |||||| | || |||||||||||||  |||| ||||||    
T  13840863 caggatcgacgccatacaaacttattagcattgatcggttttgtcaccacatccgttaggttatcacttgtctgaatcttctgcacatccatacttcc 13840960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 830291 - 830205
Alignment:
Q  110 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 194  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 830205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 825635 - 825549
Alignment:
Q  110 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 194  Q
    ||||||||||||||  |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattcta 825549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 825686 - 825632
Alignment:
Q  6 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825686 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 30397013 - 30397191
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaacttt-cactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctc 99  Q
    |||| |||||| ||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||   ||||||| ||||     
T  30397013 agggaaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctcta 30397111  T
Q  100 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 188  Q
    | ||  |||||||||||||  |||        ||||||||||| ||||||||||||||||  ||| ||||||||||| || ||||||||    
T  30397112 tgtt-gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact 30397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 830342 - 830288
Alignment:
Q  6 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 60  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830342 aaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 8004278 - 8004167
Alignment:
Q  7 aaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttata 106  Q
    |||||| |||||| | || |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| |||||||||||| ||||||||||||||    
T  8004278 aaaaacaacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta-cactctctcttata 8004180  T
Q  107 aataggagaatac 119  Q
    |||||||||||||    
T  8004179 aataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 13843921 - 13844014
Alignment:
Q  24 agtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaat 117  Q
    |||| |||| ||||| ||||||||||||||||||||||| || | |||||||||| ||| || |||||||||||| | ||| ||||||||||||    
T  13843921 agtatagaattttcattaagtggaagaaattacaggacccctttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 13840387 - 13840456
Alignment:
Q  50 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 119  Q
    ||||||||  ||||||||||||||| ||||||||||||||||| | ||||||||| |||||  |||||||    
T  13840387 aaattacaaaacctctctctaaatataaggagagtacaattacaattctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 213; Significance: 1e-116; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 27874096 - 27874327
Alignment:
Q  3 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874096 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctct 27874195  T
Q  103 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagct 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||||    
T  27874196 tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaagct 27874294  T
Q  203 ttacttgttcttgtgttgttactgatttgggat 235  Q
    |||||||||||||||||||||||||||||||||    
T  27874295 ttacttgttcttgtgttgttactgatttgggat 27874327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 26976235 - 26976470
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26976235 aggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 26976334  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  26976335 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 26976433  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  26976434 ctttacttgttcttgtgttgttactgatttgggatga 26976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 1234914 - 1234680
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  1234914 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 1234815  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  1234814 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 1234716  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatg 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  1234715 ctttacttgttcttgtgttgttactgatttgggatg 1234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 27878813 - 27879134
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878813 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 27878912  T
Q  101 cttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta---- 194  Q
    |||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||        
T  27878913 cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaa 27879012  T
Q  195 -aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagcca 283  Q
     |||||         |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || |||||    
T  27879013 gaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagcca 27879112  T
Q  284 tgcctcaaccattttcatttat 305  Q
    |||| |||||| || |||||||    
T  27879113 tgccccaaccaattgcatttat 27879134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 451 - 659
Target Start/End: Original strand, 26976720 - 26976928
Alignment:
Q  451 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 550  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  26976720 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 26976819  T
Q  551 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 650  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |    
T  26976820 ccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttttgcatatccacgc 26976919  T
Q  651 ttccctcct 659  Q
    |||||||||    
T  26976920 ttccctcct 26976928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 454 - 659
Target Start/End: Original strand, 27874539 - 27874744
Alignment:
Q  454 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  27874539 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 27874638  T
Q  554 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 653  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  27874639 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 27874738  T
Q  654 cctcct 659  Q
    | ||||    
T  27874739 cttcct 27874744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 466 - 659
Target Start/End: Complemental strand, 18967543 - 18967350
Alignment:
Q  466 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 565  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||| || | ||  ||||||| |||| |||||||||||| |||||||||    
T  18967543 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctaccttacccattcatgttgctatgttttcaataggccataggaggatcga 18967444  T
Q  566 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 659  Q
    ||||||| |||||| ||||  ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18967443 caccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 18967350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 30986716 - 30986552
Alignment:
Q  6 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  30986716 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctcttgt 30986617  T
Q  106 aaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta 172  Q
    |||||| |||||    ||| |||| | |||||||||||||||  ||||||||||| || ||||||||||    
T  30986616 aaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta 30986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 30966858 - 30966683
Alignment:
Q  8 aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataa 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |||    
T  30966858 aaaatcacggggcaagagtagagaactttcactaagtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaa 30966759  T
Q  108 ataggagaatacaaactaacacaaactaggagaaacctcac-aggagaaactaatt-tttctctctatattttttctctc 185  Q
    |||| |||||    ||| |  | | |||||||||||||||| || |||||||| || |||||||||||||||||||||||    
T  30966758 atagaagaat----actgaggctacctaggagaaacctcacaagtagaaactatttctttctctctatattttttctctc 30966683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 18968090 - 18967912
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctc 99  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||| | |||||    
T  18968090 aggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctctc 18967992  T
Q  100 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 188  Q
    || |  |||||||||||||| |||        |||||||||||||||||| |||||||||  ||| |||| ||||||||| ||||||||    
T  18967991 tcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact 18967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 463 - 579
Target Start/End: Complemental strand, 21966604 - 21966493
Alignment:
Q  463 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactcc-agttgctacgtttccaataggccatacgagga 561  Q
    ||||||||||| ||||||||| || ||||||||| || || ||||||||||||||||||||||||||   |||||||||||| |      ||||||||||    
T  21966604 atgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttgccaactccttattgctacgtttcaa------catacgagga 21966511  T
Q  562 tcgacaccatacaaactt 579  Q
    ||||||||||||||||||    
T  21966510 tcgacaccatacaaactt 21966493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 21966758 - 21966677
Alignment:
Q  7 aaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 88  Q
    ||||| || ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966758 aaaaatcatggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 463 - 523
Target Start/End: Complemental strand, 30968629 - 30968569
Alignment:
Q  463 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgcc 523  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  30968629 atgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttgcc 30968569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 651
Target Start/End: Original strand, 1472398 - 1472492
Alignment:
Q  557 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 651  Q
    |||||||||||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  1472398 gaggatcgacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacact 1472492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 498
Target Start/End: Original strand, 1472341 - 1472378
Alignment:
Q  461 acatgttcacaatctcccacttaaagtcacttttgtga 498  Q
    |||| |||||||||||||||||||||||||||||||||    
T  1472341 acatcttcacaatctcccacttaaagtcacttttgtga 1472378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 23012619 - 23012667
Alignment:
Q  17 gggcaagagtagagaactttcactaagtggaagaaattacaggacctct 65  Q
    |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012619 gggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 597 - 653
Target Start/End: Complemental strand, 21965725 - 21965669
Alignment:
Q  597 ttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 653  Q
    |||||||||||||| |||| |||||||||||||||   |||||||| ||||| ||||    
T  21965725 ttgtcattacatcttctaggttatcattggtgtgagcattctgcatatccacccttc 21965669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5818617 - 5818852
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5818617 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 5818716  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  5818717 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 5818815  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatga 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  5818816 ctttacttgttcttgtgttgttactgatttgggatga 5818852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5823379 - 5823613
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5823379 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 5823478  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  5823479 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 5823577  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatg 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  5823578 ctttacttgttcttgtgttgttactgatttgggatg 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 54546097 - 54545902
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54546097 aggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctct 54545998  T
Q  101 cttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 194  Q
    |||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  54545997 cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 54545902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 3 - 305
Target Start/End: Original strand, 2817368 - 2817658
Alignment:
Q  3 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca--ctctct 100  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||  ||||||    
T  2817368 gggaaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctctct 2817467  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| |||||| |||||||              ||||||||||| |||| ||||||||||||||||||||| ||| |||||||||    
T  2817468 cttataaataggagaatactaactaatacaaact--------------aggagaaactatttttcctctctatattttttctctcattaccctaaacaag 2817553  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |  | || ||||||||| |||||| || ||    
T  2817554 ttttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaattgca 2817653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 454 - 659
Target Start/End: Complemental strand, 54545632 - 54545427
Alignment:
Q  454 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||| ||||||||| |||||||||||||||    
T  54545632 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttgccaacttcagttgctatgtttccaataggcca 54545533  T
Q  554 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 653  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  54545532 tacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 54545433  T
Q  654 cctcct 659  Q
    | ||||    
T  54545432 cttcct 54545427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 451 - 659
Target Start/End: Original strand, 5819102 - 5819310
Alignment:
Q  451 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 550  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  5819102 atgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 5819201  T
Q  551 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 650  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |    
T  5819202 ccatacgaggatcgacgccatataaacttgtcagtgttgatcggctttgtcattacaactgctaggttatcattagtgtgaatcttttgcatatccacgc 5819301  T
Q  651 ttccctcct 659  Q
    |||||||||    
T  5819302 ttccctcct 5819310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
Q  50 aaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca 149  Q
    |||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca 24671262  T
Q  150 ggagaaactaatttttctctctatattttttctctcact 188  Q
    ||||||||||  ||| |||||||||||||| ||||||||    
T  24671263 ggagaaactatatttcctctctatatttttcctctcact 24671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 35977161 - 35977103
Alignment:
Q  34 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 92  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 24659240 - 24659287
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 50  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24659240 aggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
Q  63 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 162  Q
    |||||||||||||||||||||   ||||||| ||||||| |  |||||||||||||| ||||        ||| |||||||||||||||||||||||  |    
T  4579241 tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat 4579152  T
Q  163 tttctctctatattttttctctcact 188  Q
    || |||||||||||||| ||||||||    
T  4579151 ttcctctctatatttttcctctcact 4579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 31204872 - 31204950
Alignment:
Q  4 ggaaaaaaccacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 83  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204872 ggaaaaaatcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 498
Target Start/End: Complemental strand, 42589389 - 42589352
Alignment:
Q  461 acatgttcacaatctcccacttaaagtcacttttgtga 498  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42589389 acatcttcacaatctcccacttaaagtcacttttgtga 42589352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9439476 - 9439710
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  9439476 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 9439575  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  9439576 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 9439674  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatg 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  9439675 ctttacttgttcttgtgttgttactgatttgggatg 9439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9444196 - 9444430
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  9444196 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 9444295  T
Q  101 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  9444296 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 9444394  T
Q  201 ctttacttgttcttgtgttgttactgatttgggatg 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  9444395 ctttacttgttcttgtgttgttactgatttgggatg 9444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 454 - 659
Target Start/End: Original strand, 9439921 - 9440126
Alignment:
Q  454 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9439921 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactccagttgctacgtttccaataggcca 9440020  T
Q  554 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 653  Q
    ||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  9440021 tacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 9440120  T
Q  654 cctcct 659  Q
    | ||||    
T  9440121 cttcct 9440126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 498
Target Start/End: Original strand, 24594367 - 24594404
Alignment:
Q  461 acatgttcacaatctcccacttaaagtcacttttgtga 498  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24594367 acatcttcacaatctcccacttaaagtcacttttgtga 24594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 651
Target Start/End: Original strand, 24594424 - 24594518
Alignment:
Q  557 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 651  Q
    ||||||| |||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || |||||    
T  24594424 gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacact 24594518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 466 - 659
Target Start/End: Original strand, 27877 - 28070
Alignment:
Q  466 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 565  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||| | ||  ||||||||||||||||||||||||| |||||||||    
T  27877 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttgcccattcatgttgctacgtttccaataggccataggaggatcga 27976  T
Q  566 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 659  Q
    ||||||| |||||| ||||  ||||| || ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27977 caccatataaacttgtcagcattgattggttttgtaatcacatctactagattatcattggtgtgaatcttctgcatgtccacacttccctcct 28070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 27330 - 27508
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||   |||||||| ||||    
T  27330 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca-tctc 27428  T
Q  100 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 188  Q
    ||||  ||||||| |||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  27429 tctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 8e-60; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 466 - 659
Target Start/End: Original strand, 2323956 - 2324149
Alignment:
Q  466 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 565  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||| |||||||| ||||||    
T  2323956 ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttgcccattcatgttgctacgtttccaatagtccatacgatgatcga 2324055  T
Q  566 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcct 659  Q
    ||||||| ||||||   ||  ||||| ||||||||||| |||||||||||  ||||||||||||| ||||||||||| ||||||||||||||||    
T  2324056 caccatataaacttggtagcattgattggctttgtcatcacatctgctagggtatcattggtgtggatcttctgcatatccacacttccctcct 2324149  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 30235230 - 30235038
Alignment:
Q  6 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctc-taaatacaaggagagtacaattaccactctctctta 104  Q
    |||||||||||||  ||||||||| |||||||| ||| | ||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||||    
T  30235230 aaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctctctta 30235131  T
Q  105 taaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcactactcta 194  Q
    |||||||||||||||||  |||||||| |  || |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  30235130 taaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactactcta 30235038  T

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Target: chr7; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 16183735 - 16183913
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||   ||||||| |||||    
T  16183735 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctc 16183833  T
Q  100 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 188  Q
    ||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  16183834 tctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 16183913  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8138563 - 8138645
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 83  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8138563 aggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 8140067 - 8140183
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 100  Q
    |||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||   ||||||| ||||||    
T  8140067 aggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctctct 8140165  T
Q  101 cttataaataggagaatac 119  Q
    |||  ||||||||||||||    
T  8140166 ctt-gaaataggagaatac 8140183  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 459 - 659
Target Start/End: Complemental strand, 22510398 - 22510199
Alignment:
Q  459 acacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacga 558  Q
    |||||||||||| |||||  | ||||||  | ||||| |||||| |||||| ||||||||||||||||||| ||| ||| ||||  ||||||||| |       
T  22510398 acacatgttcactatctc--aattaaagctatttttgggagctttcaaaatatctctaccttgccaactcctgtttctatgttttgaataggccacagag 22510301  T
Q  559 ggatcgacaccatacaaacttatcagtgttga-tcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc 657  Q
    |||| ||||||||| |||||||||| | |||| | | |||| |||| ||||||||| | |||||||  || ||||||||| |||| ||||||  ||||||    
T  22510300 ggattgacaccatataaacttatcaatattgattagactttttcatcacatctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctc 22510201  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 651
Target Start/End: Original strand, 7504696 - 7504790
Alignment:
Q  557 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacact 651  Q
    |||||||||||||||  ||| || ||||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| || ||||| || |||||    
T  7504696 gaggatcgacaccatgtaaatttgtcagtattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttttgcatatcaacact 7504790  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 498
Target Start/End: Original strand, 7504639 - 7504676
Alignment:
Q  461 acatgttcacaatctcccacttaaagtcacttttgtga 498  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7504639 acatcttcacaatctcccacttaaagttacttttgtga 7504676  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 5102701 - 5102749
Alignment:
Q  7 aaaaaccacggggcaagagtagagaactttcactaagtggaagaaatta 55  Q
    |||||||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102701 aaaaaccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

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Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 46191444 - 46191266
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccactctc 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||   ||||||| |||||    
T  46191444 aggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctctc 46191346  T
Q  100 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 188  Q
    ||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  46191345 tctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 46191266  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 30697218 - 30697300
Alignment:
Q  1 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 83  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697218 aggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 4130296 - 4130215
Alignment:
Q  3 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  4130296 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 565
Target Start/End: Original strand, 41413422 - 41413523
Alignment:
Q  464 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 563  Q
    |||||||||||| ||| |||||   ||||||| |||||| |||||| ||||| ||||||| | ||  ||||||| ||||| ||||| ||| ||||| |||    
T  41413422 tgttcacaatcttccatttaaaactacttttgcgagctttcaaaatatctctgccttgcccattcttgttgctatgtttctaatagaccaaacgagaatc 41413521  T
Q  564 ga 565  Q
    ||    
T  41413522 ga 41413523  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 30674787 - 30674865
Alignment:
Q  39 ctaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 119  Q
    ||||||||||||||||| |  ||||||| ||||| | |||||||| ||||||| || |||||||| | |||||||||||||    
T  30674787 ctaagtggaagaaattatacaacctctcactaaaaataaggagagaacaatta-cattctctcttgt-aataggagaatac 30674865  T

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