View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_41 (Length: 364)
Name: NF0526_low_41
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 40832533 - 40832842
Alignment:
| Q |
11 |
cacagacagcgacaagaagaatggcatgaactccacactcttggttttgatcactaatctctgcatataattaaaaatccacaattaatggcatgttttg |
110 |
Q |
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| T |
40832533 |
cacaaacagcgacaagaagaatggcatgaactccacactcttggttttgatcactaatctctgcatataattaaaaatccacaattaatggcatgttttg |
40832632 |
T |
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| Q |
111 |
aaatttggcttgataatattacattaactagtatattttgagtcattaatattggatatcagaaaattttgtttcagaggtaatttattttgaaactatg |
210 |
Q |
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| T |
40832633 |
aaatttggcttgatagtattacattaactagtatattttgagtcattaatattggatatcagaaaattttgtttcagaggtaatttattttgaaactatg |
40832732 |
T |
|
| Q |
211 |
tgtcttaaatctgcgtagaagtcatatttgtgcaaatgctcgagtatcttactagttgatnnnnnnnntcgttgtgctgtaaatttggcttaccataatt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| |
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| T |
40832733 |
tgtcttaaatctgcgtagaagtcatatttgtgcaaatgctcgagtatcttactagttgataaaaaaaatggttgtgccgtaaatttggcttaccataatt |
40832832 |
T |
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| Q |
311 |
gagagtggag |
320 |
Q |
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| T |
40832833 |
gagagtggag |
40832842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 10055803 - 10055754
Alignment:
| Q |
26 |
gaagaatggcatgaactccacactcttggttttgatcactaatctctgca |
75 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
10055803 |
gaagaatggcatgaactccacactctttgttttgatcactagtctctgca |
10055754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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