View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_42 (Length: 360)
Name: NF0526_low_42
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 172 - 304
Target Start/End: Original strand, 36610218 - 36610350
Alignment:
| Q |
172 |
attacaatagtagaatcggaatcagaagaggaaataatggttgaagagagtaggcgtgaggaagatgatagggctagagagtggagtaataataagaata |
271 |
Q |
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| T |
36610218 |
attacaatagtagaatcggaatcagaagaggaaataatgggtgaagagagtaggtgtgaggaagatgatagggctagagagtggagtaataataagaata |
36610317 |
T |
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| Q |
272 |
atgaaaggtatagaaggaggtgtcaccagcaat |
304 |
Q |
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| T |
36610318 |
atgaaaggtatagaaggaggtgtcaccagcaat |
36610350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 36610055 - 36610156
Alignment:
| Q |
9 |
caacaatatgagagtagatagaccagacattctatacgctaatcgacaagatggacggttgagattgtatcttgttccagatcaatgcaacacaaatgat |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
36610055 |
caacaaaatgagagtagatagaccagacattctatatgctaatcgacaagatggacggttgagattgtatcttgttccagatgaatgcaacgcaaatgat |
36610154 |
T |
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| Q |
109 |
gt |
110 |
Q |
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|| |
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| T |
36610155 |
gt |
36610156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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