View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_43 (Length: 359)
Name: NF0526_low_43
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 9452724 - 9453007
Alignment:
| Q |
30 |
actattatataattataattgtgtaattaaaaatcaaggaaataaaactttgtcaagtatcaggttaacaattccttgctctattataatagtacataaa |
129 |
Q |
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| T |
9452724 |
actattatataattataattgtgtaatgaaa--tcagggaaataaaactttgtcaagtatcaggttaacaattccttgctctattatgatagtacataaa |
9452821 |
T |
|
| Q |
130 |
ttagatttggttagataaataaaactttgtc-aaaaaacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggatttttca |
228 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9452822 |
ttagatttggttagaaaaataaaactttgtcaaaaaaacaatttgagatggcaaagatattttataagaaaaatgctagataccgcgagaggatttttca |
9452921 |
T |
|
| Q |
229 |
caaaagcttccagaatgagatgg----acatc---------atcatatatttaatgaattcaccgcttcatcttaaaagagcaaca |
301 |
Q |
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| T |
9452922 |
cgaaagcttctagaatgagatggcaacacaccatccattagatcttatatttaatgaatttaccgcttcatcttaaaagagcaaca |
9453007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 21546750 - 21546588
Alignment:
| Q |
29 |
aactattatataattataattgtgtaattaaaaatcaaggaaataaaactttgtcaagtatcaggttaacaattccttgctctattataatagtacataa |
128 |
Q |
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||||||||||||||||||| |||||||| ||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
21546750 |
aactattatataattataactgtgtaatgaaa--tcagggaaataaaact--gtcaagtaacaggttaacaattccttgctctattatgatagtacataa |
21546655 |
T |
|
| Q |
129 |
attagatttggttagataaataaaactttgtcaaaaaacaatttgagatggcaaagatattttataa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
21546654 |
attagatttggttagataaataaaactttgtcaaaaaacaatttgatatgacaaagatattttataa |
21546588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 15385698 - 15385662
Alignment:
| Q |
313 |
gtcaagtttctgttccaaatcccacatactgcctttg |
349 |
Q |
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| T |
15385698 |
gtcaagtttctgttccaaatcccacatactgcctttg |
15385662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 46424154 - 46424194
Alignment:
| Q |
261 |
tatatttaatgaattcaccgcttcatcttaaaagagcaaca |
301 |
Q |
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| T |
46424154 |
tatatttaatgaattcatcgcttcatcttaaaagagcaaca |
46424194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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