View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_45 (Length: 345)

Name: NF0526_low_45
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_45
NF0526_low_45
[»] chr2 (6 HSPs)
chr2 (29-193)||(27101587-27101749)
chr2 (188-287)||(27101346-27101445)
chr2 (188-239)||(26986225-26986276)
chr2 (188-239)||(27026031-27026082)
chr2 (188-239)||(27079088-27079139)
chr2 (150-183)||(21431839-21431872)
[»] chr8 (1 HSPs)
chr8 (296-345)||(3776764-3776813)
[»] chr1 (2 HSPs)
chr1 (296-345)||(42434910-42434959)
chr1 (296-345)||(5830386-5830435)
[»] chr5 (1 HSPs)
chr5 (296-345)||(9618416-9618465)
[»] chr7 (1 HSPs)
chr7 (188-239)||(30228704-30228755)
[»] chr6 (1 HSPs)
chr6 (188-239)||(34688283-34688334)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 27101749 - 27101587
Alignment:
Q  29 acacctatgaagcatggaaagtatagcaatctctggaatttcgagatcctgtaaaagcaaaaatgtaagggaaaaactatcaattttcctactttaaaag 128  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  27101749 acacctttgaagcacggaaagtatagcaatctctggaatttcgagatcctgtaaaagcaaa--tgtaagggaaaaactaccaattttcctactttaaaag 27101652  T
Q  129 ttcgtttacttatatgctttcatgcttttccttgtgtcaatgatagttagattgtgtcaatgatg 193  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27101651 ttcgtttacttatatgctttaatgcttttccttgtgtcaatgatagttagattgtgtcaatgatg 27101587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 27101445 - 27101346
Alignment:
Q  188 atgatgagacagaatttccggacagtaccgattcatttgacagtactgatgatagttcagacatcttgatgggccgattcatttgacagtaccgattcat 287  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  27101445 atgatgagacagaatttactgacagtaccgattcatttgacagtactgatgatagttcagacaacttgatgggccgattcatttgacagtaccgactcat 27101346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 26986225 - 26986276
Alignment:
Q  188 atgatgagacagaatttccggacagtaccgattcatttgacagtactgatga 239  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  26986225 atgatgagacagaatttcctgacagtaccgattcatctggcagtactgatga 26986276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 27026031 - 27026082
Alignment:
Q  188 atgatgagacagaatttccggacagtaccgattcatttgacagtactgatga 239  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  27026031 atgatgagacagaatttcctgacagtaccgattcatctggcagtactgatga 27026082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 27079139 - 27079088
Alignment:
Q  188 atgatgagacagaatttccggacagtaccgattcatttgacagtactgatga 239  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  27079139 atgatgagacagaatttcctgacagtaccgattcatctggcagtactgatga 27079088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 21431839 - 21431872
Alignment:
Q  150 atgcttttccttgtgtcaatgatagttagattgt 183  Q
    |||||||||||||||||| |||||||||||||||    
T  21431839 atgcttttccttgtgtcattgatagttagattgt 21431872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 3776813 - 3776764
Alignment:
Q  296 accacctatcgacgtctttctctctatctcacggccaccggttctcttcc 345  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3776813 accacctaccgacgtctttctctctatctcacggccaccggttctcttcc 3776764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 42434959 - 42434910
Alignment:
Q  296 accacctatcgacgtctttctctctatctcacggccaccggttctcttcc 345  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  42434959 accacctaccgacgtctttttctctatctcacggccaccggttctcttcc 42434910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 5830435 - 5830386
Alignment:
Q  296 accacctatcgacgtctttctctctatctcacggccaccggttctcttcc 345  Q
    |||||| | |||| |||||||||||||||||||| |||||||||||||||    
T  5830435 accaccaaccgacatctttctctctatctcacggacaccggttctcttcc 5830386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 9618465 - 9618416
Alignment:
Q  296 accacctatcgacgtctttctctctatctcacggccaccggttctcttcc 345  Q
    |||||| | |||| ||||||||||||||||||||||||||||||||||||    
T  9618465 accaccaaccgacatctttctctctatctcacggccaccggttctcttcc 9618416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 30228704 - 30228755
Alignment:
Q  188 atgatgagacagaatttccggacagtaccgattcatttgacagtactgatga 239  Q
    ||||||||||| ||||||| |||||||||||||||| || ||||||||||||    
T  30228704 atgatgagacaaaatttcctgacagtaccgattcatctggcagtactgatga 30228755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 34688283 - 34688334
Alignment:
Q  188 atgatgagacagaatttccggacagtaccgattcatttgacagtactgatga 239  Q
    ||||||||||||||||||| |||||||| ||||||| || ||||||||||||    
T  34688283 atgatgagacagaatttcctgacagtactgattcatctggcagtactgatga 34688334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1690 times since January 2019
Visitors: 3672