View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0526_low_48 (Length: 331)
Name: NF0526_low_48
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_48 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 36845812 - 36846034
Alignment:
| Q |
21 |
acatcatcaccatggatttctatcaattacaaacaccactaattcaattaaaactcatctccattatcaaacacacagtcagtttaaggaaaaagaagaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
36845812 |
acatcatcaccatggatttctatcaattacaaacatcactaattcaattaaaactcatctccattatcaaacacatagtcagtttaaggaaaaagaagaa |
36845911 |
T |
|
| Q |
121 |
aagtttcaaaatccagttccactccaaatcaataacaaccacaaattctccttacgttgaatccaaaatctgaatcatgaaacacaaagatgacaaatcc |
220 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36845912 |
aaatttcaaaatccagttccactccaaatcaataacaaccacaaattctccttacgttgaatccaaaatctgaatcatgaaacacaaagatgacaaatcc |
36846011 |
T |
|
| Q |
221 |
atatcaaaatcaataaccaaatc |
243 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
36846012 |
agatcaaaatcaataaccaaatc |
36846034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 26630205 - 26630416
Alignment:
| Q |
21 |
acatcatcaccatggatttctatcaattacaaacaccactaattcaattaaaactcatctccattatcaaacacacagtcagtttaaggaaaaagaagaa |
120 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
26630205 |
acatcatcaccatcgatttctatcaattccaaacaccactaattcaattaaaactcatctccatcatcaaacacacagtcagtttaaggaaaaagaagaa |
26630304 |
T |
|
| Q |
121 |
aagtttcaaaatccagttcca-ctccaaatcaataacaaccacaaattctccttacgttgaatccaaaatctgaatcatgaaacacaaagatgacaaatc |
219 |
Q |
| |
|
|| ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |
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|
| T |
26630305 |
aaatttcaaaattcagttccacccccaaatcaataacaaccacaaattctccttacgttgaatccaaaatctgaatcaggaaacacagagatgaaaaatc |
26630404 |
T |
|
| Q |
220 |
catatcaaaatc |
231 |
Q |
| |
|
|| ||||||||| |
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|
| T |
26630405 |
caaatcaaaatc |
26630416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 43441763 - 43441986
Alignment:
| Q |
21 |
acatcatcaccatggatttctatcaattacaaacaccactaattcaattaaaactcatctccattatcaaacacacagtcagtttaaggaaaaagaagaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
43441763 |
acatcatcaccatggatttctatcaattccaaacaccactaattcaattaaaactcatctccattatcaaacacacagtcaatttaaggaaaaagaaaaa |
43441862 |
T |
|
| Q |
121 |
aagtttcaaaatccagttccac-tccaaatcaataacaaccacaaattctccttacgttgaatccaaaatctgaatcatgaaacacaaagatgacaaatc |
219 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
43441863 |
aaaattcaaaatccagttccacttccaaatcaataacaaccacaaattctccttacgttgaatccaaaatttgaatcatgaaacacaaagatgaaaaatc |
43441962 |
T |
|
| Q |
220 |
catatcaaaatcaataaccaaatc |
243 |
Q |
| |
|
|| ||||||||||||||||||||| |
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|
| T |
43441963 |
caaatcaaaatcaataaccaaatc |
43441986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 31845499 - 31845286
Alignment:
| Q |
21 |
acatcatcaccatggatttctatcaattacaaacaccactaattcaattaaaactcatctccattatcaaacacacagtcagtttaaggaaaaagaagaa |
120 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
31845499 |
acattatcaccatcgatttctatcaattccaaacaccactaattcaattaaaactcatctccatcatcaaacacacagtcagtttaagaaaaaagaagaa |
31845400 |
T |
|
| Q |
121 |
aagtttcaaaatccagttccactc-caaatcaataacaaccacaaattctccttacgttgaatccaaaatctgaatcatgaaacacaaagatgacaaatc |
219 |
Q |
| |
|
|| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
31845399 |
aaatttcaaaattcagttccactctcaaatcaataacaaccacagattctccttacgttgaatccaaaatctgaatcatgaaacacaaagatgaaaaatc |
31845300 |
T |
|
| Q |
220 |
catatcaaaatcaa |
233 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
31845299 |
caaatcaaaatcaa |
31845286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 43202749 - 43202895
Alignment:
| Q |
83 |
attatcaaacacacagtcagtttaaggaaaaagaagaaaagtttcaaaatccagttccactcc-aaatcaataacaaccacaaattctccttacgttgaa |
181 |
Q |
| |
|
|||||||||||||| |||| |||||| ||| ||||| || ||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
43202749 |
attatcaaacacacggtcaatttaag-aaatagaagggaaatttaaaaatccagtcccactcctaaatcaataacaaccccaaattctccttacgttg-- |
43202845 |
T |
|
| Q |
182 |
tccaaaatctgaatcatgaaacacaaagatgacaaatccatatcaaaatcaataac |
237 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||| || ||||||||||||||| |
|
|
| T |
43202846 |
-----aatctgaatcatgaaacataaa-atgaaaaattcaaatcaaaatcaataac |
43202895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 43202502 - 43202576
Alignment:
| Q |
22 |
catcatcaccatggatttctatcaattacaaacaccactaattcaattaaaactcatctccattatcaaacacac |
96 |
Q |
| |
|
|||||||| ||| |||||||||||||| || |||||| |||||||||||||||||||| ||||||||||| |||| |
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|
| T |
43202502 |
catcatcatcatcgatttctatcaattccatacaccattaattcaattaaaactcatcaccattatcaaagacac |
43202576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 14663289 - 14663253
Alignment:
| Q |
264 |
gattacttgatccttccagcaagctatgaccatgttc |
300 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
14663289 |
gattacttgatccttccatcaagctattaccatgttc |
14663253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 48527932 - 48528152
Alignment:
| Q |
21 |
acatcatcaccatggatttctatcaattacaaacaccactaattcaattaaaactcatctccattatcaaacacacagtcagtttaaggaaaaagaagaa |
120 |
Q |
| |
|
||||||||||| | |||||||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
48527932 |
acatcatcaccgttgatttctatcaattcctaaccccactaattcaattaaaactcatcaccattatcaaacacacggtcagtttaagg-aaaagaaggg |
48528030 |
T |
|
| Q |
121 |
aagtttcaaaatccagttccact-ccaaatcaataacaaccacaaattctccttacgttgaatccaaaatctgaatcatgaaacacaaagatgacaaatc |
219 |
Q |
| |
|
|| ||||||||| |||| ||||| |||||| | |||||||| |||||| |||||||||| |||||||||||||||||||||| ||| |||||| ||| | |
|
|
| T |
48528031 |
aaatttcaaaattcagtcccactcccaaattattaacaaccccaaattttccttacgttcaatccaaaatctgaatcatgaa--acatagatgaaaaaac |
48528128 |
T |
|
| Q |
220 |
catatcaaaatcaataaccaaatc |
243 |
Q |
| |
|
|| ||||||||||||||| ||||| |
|
|
| T |
48528129 |
caaatcaaaatcaataacaaaatc |
48528152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 35 - 243
Target Start/End: Original strand, 1103037 - 1103238
Alignment:
| Q |
35 |
gatttctatcaattacaaacaccactaattcaattaaaactcatctccattatcaaacacacagtcagtttaaggaaaaagaagaaaagtttcaaaatcc |
134 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||| | || ||||||||||| |||| || ||||||||| | |
|
|
| T |
1103037 |
gatttctgtcaattccaaacaccactaattcaattaaaacac-----cattatcaaacacacggccactttaaggaaaa-gaagggaaatttcaaaattc |
1103130 |
T |
|
| Q |
135 |
agttccactcc-aaatcaataacaaccacaaattctccttacgttgaatccaaaatctgaatcatgaaacacaaagatgacaaatccatatcaaaatcaa |
233 |
Q |
| |
|
||| ||||||| |||| | |||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||| ||| ||| ||||||||||| |
|
|
| T |
1103131 |
agtcccactcccaaattattaacaaccccaaattctccttacgttcaatccaaaatctgaatcatgaa--acatagatgaaaaaaccaaatcaaaatcaa |
1103228 |
T |
|
| Q |
234 |
taaccaaatc |
243 |
Q |
| |
|
|||||||||| |
|
|
| T |
1103229 |
taaccaaatc |
1103238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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