View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_5 (Length: 655)
Name: NF0526_low_5
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 241 - 655
Target Start/End: Original strand, 35786958 - 35787363
Alignment:
| Q |
241 |
ttaagctgagccctagaaccatagagaataatagcagcacgatcataagctttagcagcatcttcagcagttgaaaaagtaccaagccatttacgagtac |
340 |
Q |
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| T |
35786958 |
ttaagctgagccctagaaccatagagaataatagcagcacgatcataagctttagcagcatcttcagcagttgaaaaagtaccaagccatttacgagtac |
35787057 |
T |
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| Q |
341 |
gtttacgtggttcacgaatttcagcaacccatttaccccaactacgttgtcttacaccacggtatctgaatttgttgttatcaggtccacctttaccttt |
440 |
Q |
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| T |
35787058 |
gtttacgtggttcacgaatttcagcaacccatttaccccaactacgttgtcttacaccacggtatctgaatttgttgttatcaggtccacctttaccttt |
35787157 |
T |
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| Q |
441 |
gcatttacggttacttttattgttgttggtgttgttggtagtgttactactgctgctgttattactgttgttatcagtgctgttgttagatgtttcactt |
540 |
Q |
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| T |
35787158 |
gcatttacggttacttttat---------tgttgttggtagtgttactgctgctgctgttattactgttgttatcagtgctgttgttagatgtttcactt |
35787248 |
T |
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| Q |
541 |
ggagtggtagtaacaacggtgttggcggtgggtttggtttcttgaacatgatgaagaggtgaatccatttttaaaaggaaagagtgtgtgagagatgaat |
640 |
Q |
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| T |
35787249 |
ggagtggtagtaacaacggtgttggcggtgggtttggtttcttgaacatgatgaagaggtgaatccatttttaaaaggaaagagtgtgtgagagatgaat |
35787348 |
T |
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| Q |
641 |
gaaaaaagaaaagat |
655 |
Q |
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| T |
35787349 |
gaaaaaagaaaagat |
35787363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 35786747 - 35786868
Alignment:
| Q |
30 |
aactaaaccattattgttattatagaaaactggttggtgatgatgatgaaaattattgtaaacaccaaatgggacaaaattattgtaaactgagaaacca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35786747 |
aactaaaccattattgttattatagaaaactggttggtgatgatgatgaaaattattgtaaacaccaaatgggacaaaattattgtaaactgagaaacca |
35786846 |
T |
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| Q |
130 |
gaaggacgaggaagtaaaggac |
151 |
Q |
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| T |
35786847 |
gaaggacgaggaagtaaaggac |
35786868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 25896641 - 25896674
Alignment:
| Q |
348 |
tggttcacgaatttcagcaacccatttaccccaa |
381 |
Q |
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| T |
25896641 |
tggttcacgaatctcagcaacccatttaccccaa |
25896674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 52690586 - 52690554
Alignment:
| Q |
349 |
ggttcacgaatttcagcaacccatttaccccaa |
381 |
Q |
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| T |
52690586 |
ggttcacggatttcagcaacccatttaccccaa |
52690554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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