View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_55 (Length: 286)
Name: NF0526_low_55
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 28 - 279
Target Start/End: Original strand, 34291635 - 34291886
Alignment:
| Q |
28 |
cattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataagcaa |
127 |
Q |
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| T |
34291635 |
cattaatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataagcaa |
34291734 |
T |
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| Q |
128 |
gagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacgtcgttt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34291735 |
gagcttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacgtcgttt |
34291834 |
T |
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| Q |
228 |
aattgtcttagtgcatcttcccatgcagacttcccttcattgctctgtgctc |
279 |
Q |
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| T |
34291835 |
aattgtcttagtgcatcttcccatgcagacttcccttcattgctcagtgctc |
34291886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 268
Target Start/End: Original strand, 34566150 - 34566370
Alignment:
| Q |
48 |
cccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataagcaagagcttatgttctttattgc |
147 |
Q |
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| T |
34566150 |
cccaagccaaaaccatgacacaataaactttcaatgggaatgtcaaagtcttctggatacaatccacaaagcataaggaagagcttatgttctctgctgt |
34566249 |
T |
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| Q |
148 |
ccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacgtcgtttaattgtcttagtgcatcttc |
247 |
Q |
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| T |
34566250 |
ccaaaaactttaaactaagctcaatgctggggtagacaaattttccaacgtctgagaagggagatgattgaaaatttcttaaatgtctaagtgcatcctc |
34566349 |
T |
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| Q |
248 |
ccatgcagacttcccttcatt |
268 |
Q |
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| T |
34566350 |
ccatgccgacttcccttcatt |
34566370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 34554466 - 34554552
Alignment:
| Q |
38 |
tttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataag |
124 |
Q |
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| T |
34554466 |
tttgaacaatcccaagcccattgcgtgacataataaactttcaataggtatgtcaaagtcttccggaaacaatccacaaagcataag |
34554552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 34372020 - 34371977
Alignment:
| Q |
75 |
ctttcaataggaatgtcaaagtcttctggaaataatccacaaag |
118 |
Q |
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| T |
34372020 |
ctttctataggaatgtcaaagtcctctggaaacaatccacaaag |
34371977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 271
Target Start/End: Original strand, 15895823 - 15896063
Alignment:
| Q |
31 |
taatgtatttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataagcaagag |
130 |
Q |
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|||||| |||||||| |||||| || | ||||||| ||| |||| |||||||||||| ||||||||||| ||||| ||||||||||||||||| || || |
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| T |
15895823 |
taatgtgtttgaacattcccaaacccactgcatgatgcaacaaacattcaataggaatatcaaagtcttcaggaaacaatccacaaagcataaggaatag |
15895922 |
T |
|
| Q |
131 |
cttatgttctttattgcccaaaaactttaaactaagctcaatccgggggtagatatgttttccaacacccaaggaggaagatgattgaacgtcgtttaat |
230 |
Q |
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||| | |||||| || |||||||||||||||||||||||||| || |||| || | |||| ||||| | | |||||||||||||||| | ||||| |
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| T |
15895923 |
cttgtattctttgtttcccaaaaactttaaactaagctcaatgcgagggtggacaaatttttcaacatctgacgaggaagatgattgaaaatttcttaat |
15896022 |
T |
|
| Q |
231 |
tgtcttagtgcatcttcccatgcagacttcccttcattgct |
271 |
Q |
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||| | |||| |||||||||||||||||||||||| |||| |
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| T |
15896023 |
tgtttaagtgtgtcttcccatgcagacttcccttcaatgct |
15896063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 130330 - 130244
Alignment:
| Q |
38 |
tttgaacaatcccaagccaaaagcatgatacaataaactttcaataggaatgtcaaagtcttctggaaataatccacaaagcataag |
124 |
Q |
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|||||||||||||||||| | |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
130330 |
tttgaacaatcccaagcctattgcatgacgcaataaaatttcaataggaatatcaaagtcttctggaaataatccacaaagcataag |
130244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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