View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_58 (Length: 284)

Name: NF0526_low_58
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_58
NF0526_low_58
[»] chr1 (25 HSPs)
chr1 (1-247)||(43207285-43207531)
chr1 (183-232)||(17470477-17470526)
chr1 (186-229)||(50811920-50811963)
chr1 (183-229)||(2435921-2435967)
chr1 (183-229)||(2436027-2436073)
chr1 (183-229)||(6983943-6983989)
chr1 (183-229)||(10378859-10378905)
chr1 (183-229)||(46859049-46859095)
chr1 (184-229)||(52910196-52910241)
chr1 (183-226)||(25554859-25554902)
chr1 (185-224)||(31442516-31442555)
chr1 (190-229)||(35019215-35019254)
chr1 (183-229)||(6358112-6358158)
chr1 (183-229)||(22327077-22327123)
chr1 (183-229)||(34679353-34679399)
chr1 (188-229)||(18724679-18724720)
chr1 (184-229)||(19701549-19701594)
chr1 (184-229)||(44485243-44485288)
chr1 (188-229)||(49546041-49546082)
chr1 (189-224)||(27136791-27136826)
chr1 (186-228)||(50760361-50760403)
chr1 (192-229)||(28894665-28894702)
chr1 (185-217)||(15511297-15511329)
chr1 (193-229)||(20036208-20036244)
chr1 (201-229)||(35117902-35117930)
[»] chr8 (6 HSPs)
chr8 (183-229)||(44781640-44781686)
chr8 (183-229)||(14018103-14018149)
chr8 (183-229)||(42083833-42083879)
chr8 (181-224)||(44742658-44742701)
chr8 (193-229)||(26457680-26457716)
chr8 (189-229)||(30962907-30962947)
[»] chr3 (13 HSPs)
chr3 (184-229)||(45620963-45621008)
chr3 (184-229)||(26573105-26573150)
chr3 (186-229)||(25944449-25944492)
chr3 (183-229)||(34420778-34420824)
chr3 (183-228)||(35417893-35417938)
chr3 (182-229)||(829576-829623)
chr3 (184-229)||(43956594-43956639)
chr3 (183-223)||(44403696-44403736)
chr3 (192-227)||(22609752-22609787)
chr3 (183-226)||(55400975-55401018)
chr3 (187-229)||(45948975-45949017)
chr3 (183-229)||(53062015-53062061)
chr3 (186-226)||(21330384-21330424)
[»] chr2 (10 HSPs)
chr2 (185-229)||(4516485-4516529)
chr2 (186-229)||(99397-99440)
chr2 (183-229)||(35010502-35010548)
chr2 (184-229)||(44521507-44521552)
chr2 (187-226)||(35017776-35017815)
chr2 (183-229)||(22890941-22890987)
chr2 (183-217)||(15296555-15296589)
chr2 (183-229)||(29420023-29420069)
chr2 (193-229)||(21377207-21377243)
chr2 (183-215)||(31821486-31821518)
[»] chr4 (19 HSPs)
chr4 (182-229)||(51420527-51420574)
chr4 (183-229)||(36589699-36589745)
chr4 (183-229)||(47441664-47441710)
chr4 (183-229)||(50856370-50856416)
chr4 (183-229)||(54966976-54967022)
chr4 (184-229)||(20908772-20908817)
chr4 (185-228)||(25343144-25343187)
chr4 (183-229)||(49938724-49938771)
chr4 (183-229)||(487269-487315)
chr4 (189-229)||(12257727-12257767)
chr4 (190-229)||(49938572-49938612)
chr4 (182-229)||(23580342-23580389)
chr4 (183-229)||(30496454-30496501)
chr4 (183-214)||(32629414-32629445)
chr4 (183-229)||(3580970-3581016)
chr4 (183-229)||(54175019-54175064)
chr4 (191-229)||(54640473-54640511)
chr4 (184-229)||(19027804-19027849)
chr4 (183-219)||(51865158-51865194)
[»] chr7 (12 HSPs)
chr7 (185-229)||(19265772-19265816)
chr7 (183-229)||(28362279-28362325)
chr7 (188-229)||(3469313-3469354)
chr7 (184-229)||(13805058-13805103)
chr7 (184-229)||(19266406-19266451)
chr7 (184-226)||(23419811-23419853)
chr7 (184-229)||(48123618-48123663)
chr7 (191-227)||(42102021-42102057)
chr7 (184-224)||(43852006-43852046)
chr7 (196-229)||(21220104-21220137)
chr7 (186-222)||(4000826-4000862)
chr7 (191-219)||(36267903-36267931)
[»] chr6 (4 HSPs)
chr6 (183-229)||(12889381-12889427)
chr6 (183-229)||(13905113-13905159)
chr6 (183-229)||(7947506-7947552)
chr6 (188-229)||(11849015-11849056)
[»] chr5 (12 HSPs)
chr5 (183-229)||(39301078-39301124)
chr5 (182-226)||(209064-209108)
chr5 (182-229)||(43574551-43574598)
chr5 (183-229)||(10634280-10634326)
chr5 (183-225)||(39079904-39079946)
chr5 (183-226)||(15173824-15173867)
chr5 (192-227)||(23974744-23974779)
chr5 (181-228)||(31694243-31694290)
chr5 (183-229)||(3771296-3771342)
chr5 (188-226)||(19143079-19143117)
chr5 (184-229)||(24903830-24903875)
chr5 (180-227)||(2838729-2838777)
[»] scaffold0057 (1 HSPs)
scaffold0057 (183-229)||(47017-47063)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 43207285 - 43207531
Alignment:
Q  1 aactttgtttaaaattcctgttccgttcaggaactgtacgaaaagctttagnnnnnnnatagtgctaattcgattcagtttagcagttcagttcagattt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||    
T  43207285 aactttgtttaaaattcctgttcagttcaggaactgtacgaaaagcttcagtttttttatagtgctaattcgattcagtttagcagttcagttcagattt 43207384  T
Q  101 ttggtgtttttgaatagccctagtttgattgtgttgcattcattcgtgaactaaaaatgcatggttattctatttagtattcaagggggagccttggcgc 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43207385 ttggtgtttttgaatagccctagtttgattgtgtagcattcattcgtgaactaaaaatgcatggttattctatttagtattcaagggggagccttggcgc 43207484  T
Q  201 aacggtaaagttgttgtcacgtgactgaatggacacactcacaggtt 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  43207485 aacggtaaagttgttgtcacgtgactgaatggacacactcacaggtt 43207531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 17470526 - 17470477
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaatgg 232  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17470526 aagggggagccttggtgcaacggtaaagttgttgtcacgtgactgaatgg 17470477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 50811920 - 50811963
Alignment:
Q  186 ggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  50811920 ggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 50811963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 2435967 - 2435921
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  2435967 aagggggggccttggcgcaacggtaaagttgttgtcacgtgactgaa 2435921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 2436073 - 2436027
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  2436073 aagggggggccttggtgcaacggtaaagttgttgtcacgtgactgaa 2436027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 6983989 - 6983943
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  6983989 aagggagagccttggcgcaatggtaaagttgttgtcacgtgactgaa 6983943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 10378905 - 10378859
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||    
T  10378905 aaggggaagccttggtgcaacggtaaagttgttgtcacgtgactgaa 10378859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 46859049 - 46859095
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  46859049 aagggggagccttggcgcaacagtaaagttgttgtcacttgactgaa 46859095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 52910196 - 52910241
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  52910196 agggggagccttggtgcaacggtaaagttgttgtcatgtgactgaa 52910241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 25554902 - 25554859
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgact 226  Q
    |||| ||||||||||||||| |||||||||||||||||||||||    
T  25554902 aaggaggagccttggcgcaatggtaaagttgttgtcacgtgact 25554859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 31442555 - 31442516
Alignment:
Q  185 gggggagccttggcgcaacggtaaagttgttgtcacgtga 224  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  31442555 gggggagccttggcgcaacggtaaagttgttgtcatgtga 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 229
Target Start/End: Original strand, 35019215 - 35019254
Alignment:
Q  190 agccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  35019215 agccttggcgcaacggtaaagttgttgtcacatgactgaa 35019254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 6358112 - 6358158
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||||||    
T  6358112 aagggggagccttggcgcaacggtaaatttgttttcacatgactgaa 6358158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 22327077 - 22327123
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||    
T  22327077 aaggtggagccttggcgcaacggcaaagttgttgtcatgtgactgaa 22327123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 34679399 - 34679353
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||||    
T  34679399 aagggggagctttggcgcaacggtaaagttattgtcatgtgactgaa 34679353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 18724720 - 18724679
Alignment:
Q  188 ggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  18724720 ggagacttggcgcaacggtaaagttgttgtcatgtgactgaa 18724679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 19701549 - 19701594
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||    
T  19701549 agggggagccttggcgcaacagtaaagttgttgtcgtgtgactgaa 19701594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 44485288 - 44485243
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||| ||||||||||||||| |||| ||||    
T  44485288 agggggagccttggcgcaacagtaaagttgttgtcatgtgattgaa 44485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 49546082 - 49546041
Alignment:
Q  188 ggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  49546082 ggagctttggcgcaacggtaaagttgttgtcacgtggctgaa 49546041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 27136826 - 27136791
Alignment:
Q  189 gagccttggcgcaacggtaaagttgttgtcacgtga 224  Q
    |||||||||| |||||||||||||||||||||||||    
T  27136826 gagccttggcacaacggtaaagttgttgtcacgtga 27136791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 50760403 - 50760361
Alignment:
Q  186 ggggagccttggcgcaacggtaaagttgttgtcacgtgactga 228  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||    
T  50760403 ggggagccttggcgcaaaggtaaagtagttgtcatgtgactga 50760361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 28894702 - 28894665
Alignment:
Q  192 ccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  28894702 ccttggcgcaacagtaaagttgttgtcatgtgactgaa 28894665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 15511329 - 15511297
Alignment:
Q  185 gggggagccttggcgcaacggtaaagttgttgt 217  Q
    |||||||||||||||||| ||||||||||||||    
T  15511329 gggggagccttggcgcaatggtaaagttgttgt 15511297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 20036208 - 20036244
Alignment:
Q  193 cttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||| |||||||||||||||| |||||||||    
T  20036208 cttggcgcaatggtaaagttgttgtcatgtgactgaa 20036244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 35117930 - 35117902
Alignment:
Q  201 aacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||||||||||||    
T  35117930 aacggtaaagttgttgtcacgtgactgaa 35117902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 44781686 - 44781640
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44781686 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 44781640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 14018149 - 14018103
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  14018149 aagggggagccttggcgcaacggtaatgttgttgtcacgtgattgaa 14018103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 42083879 - 42083833
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  42083879 aagggagagccttggcgcaacggtaaaattgttgtcacgtgactgaa 42083833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 44742701 - 44742658
Alignment:
Q  181 tcaagggggagccttggcgcaacggtaaagttgttgtcacgtga 224  Q
    |||||||||| |||||| |||||||||||||||||||| |||||    
T  44742701 tcaagggggaaccttggtgcaacggtaaagttgttgtcgcgtga 44742658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 26457680 - 26457716
Alignment:
Q  193 cttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  26457680 cttggcgcaacggtaaagttgttgtcgcgtgattgaa 26457716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 30962947 - 30962907
Alignment:
Q  189 gagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||| ||||||||||||| |||| ||||    
T  30962947 gagccttggcgcaacggaaaagttgttgtcatgtgattgaa 30962907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 45621008 - 45620963
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45621008 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 45620963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 26573105 - 26573150
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  26573105 agggggacccttggcgcaacggtaaagttgttgtcacgtgactgaa 26573150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 25944449 - 25944492
Alignment:
Q  186 ggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  25944449 ggggagccttggcgcaacagtaaagttgttgtcacgtgactgaa 25944492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 34420824 - 34420778
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  34420824 aagggggggccttggcgcaacagtaaagttgttgtcacgtgactgaa 34420778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 35417893 - 35417938
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactga 228  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  35417893 aagggggagccttggcgcaacggtaaagttgttatcatgtgactga 35417938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 829623 - 829576
Alignment:
Q  182 caagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  829623 caagggggagttttggcgcaacggtaaagttgttgtcacgtgattgaa 829576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 43956639 - 43956594
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||    
T  43956639 agggggaaccttggcgcaacggtaaagttgttgttacttgactgaa 43956594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 44403736 - 44403696
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtg 223  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  44403736 aagggggagccttggtgcaacggtaaagttattgtcacgtg 44403696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 22609752 - 22609787
Alignment:
Q  192 ccttggcgcaacggtaaagttgttgtcacgtgactg 227  Q
    |||||||||||||||||||||||||||| |||||||    
T  22609752 ccttggcgcaacggtaaagttgttgtcatgtgactg 22609787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 55400975 - 55401018
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgact 226  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||    
T  55400975 aagggggacccttggcacaacggtaaagttgttgtcatgtgact 55401018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 45949017 - 45948975
Alignment:
Q  187 gggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||| |||||||| ||| |||||||||    
T  45949017 gggagccttggcgcaacggtgaagttgttttcatgtgactgaa 45948975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 53062015 - 53062061
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||  |||||||| ||||||||||||||||| |||||||||    
T  53062015 aagggggaggattggcgcatcggtaaagttgttgtcatgtgactgaa 53062061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 21330424 - 21330384
Alignment:
Q  186 ggggagccttggcgcaacggtaaagttgttgtcacgtgact 226  Q
    ||||||||||||||||| |||||||| ||||||| ||||||    
T  21330424 ggggagccttggcgcaatggtaaagtggttgtcatgtgact 21330384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 4516529 - 4516485
Alignment:
Q  185 gggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4516529 gggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 4516485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 99440 - 99397
Alignment:
Q  186 ggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  99440 ggggagccttggcgcaacagtaaagttgttgtcacgtgactgaa 99397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 35010502 - 35010548
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  35010502 aagggggagccttggtgcaacggtaaagttgttgtcatgtgactgaa 35010548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 44521552 - 44521507
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  44521552 agggggagccttggcggaacggtaaagttgttatcacgtgactgaa 44521507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 35017776 - 35017815
Alignment:
Q  187 gggagccttggcgcaacggtaaagttgttgtcacgtgact 226  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  35017776 gggagccttggcgcaacggtaaagttgttgtcatgtgact 35017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 22890941 - 22890987
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||| || |||||||||||| ||||||||||||||||    
T  22890941 aagggggagccttgacgtaacggtaaagttattgtcacgtgactgaa 22890987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 15296589 - 15296555
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgt 217  Q
    ||||||||||||||||| |||||||||||||||||    
T  15296589 aagggggagccttggcggaacggtaaagttgttgt 15296555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 29420069 - 29420023
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||| |||||  ||||||||||||||||||||| ||||||||    
T  29420069 aagggggagtcttggtccaacggtaaagttgttgtcacatgactgaa 29420023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 21377243 - 21377207
Alignment:
Q  193 cttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  21377243 cttggagcaacggtaaagttgttgtcatgtgactgaa 21377207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 31821518 - 31821486
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgtt 215  Q
    ||||||||||||||||||||||||| |||||||    
T  31821518 aagggggagccttggcgcaacggtatagttgtt 31821486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 51420527 - 51420574
Alignment:
Q  182 caagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51420527 caagggggagccttggcgcaacggtgaagttgttgtcacgtgactgaa 51420574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 36589699 - 36589745
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  36589699 aagggggagccttggcgcaacggtaaagttgatgtcacatgactgaa 36589745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 47441710 - 47441664
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  47441710 aaggaggagctttggcgcaacggtaaagttgttgtcacgtgactgaa 47441664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 50856416 - 50856370
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  50856416 aagggggagccttggcgcaacggtaaagttgttgtcacatgattgaa 50856370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 54966976 - 54967022
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||    
T  54966976 aagggggaaccttggcgcaacggtaaagttgttgtcatgtgactgaa 54967022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 20908817 - 20908772
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||    
T  20908817 agggggagccttggcacaacggtaaagttgttgtcatgtgactgaa 20908772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 25343144 - 25343187
Alignment:
Q  185 gggggagccttggcgcaacggtaaagttgttgtcacgtgactga 228  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  25343144 gggggaggcttggcgcaatggtaaagttgttgtcacgtgactga 25343187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 49938771 - 49938724
Alignment:
Q  183 aagggggagccttggcgcaacggtaaa-gttgttgtcacgtgactgaa 229  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  49938771 aagggggagccctggcgcaacggtaaaagttgttgtcacgtgactgaa 49938724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 487315 - 487269
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||    
T  487315 aaggaggagccttggcgtaacggtaaagttgttgtcatgtgactgaa 487269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 12257767 - 12257727
Alignment:
Q  189 gagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  12257767 gagccttgacgcaacggtaaagttgttgtcacgtgattgaa 12257727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 49938612 - 49938572
Alignment:
Q  190 agccttggcgcaacggtaaa-gttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  49938612 agccttggcgcaacggtaaaagttgttgtcacgtgactgaa 49938572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 23580389 - 23580342
Alignment:
Q  182 caagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||| ||||||||  |||||| ||||||||||||||||||||||||    
T  23580389 caagggagagccttgatgcaacgctaaagttgttgtcacgtgactgaa 23580342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 30496501 - 30496454
Alignment:
Q  183 aagggggagccttggcgcaacggtaaa-gttgttgtcacgtgactgaa 229  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  30496501 aagggggagacttggcgcaactgtaaaagttgttgtcacgtgactgaa 30496454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 214
Target Start/End: Complemental strand, 32629445 - 32629414
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgt 214  Q
    ||||||||||||||||||||||||||||||||    
T  32629445 aagggggagccttggcgcaacggtaaagttgt 32629414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 3581016 - 3580970
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||  | ||||||||||||||| |||||||||    
T  3581016 aagggggagccttggcgcggcagtaaagttgttgtcatgtgactgaa 3580970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 54175019 - 54175064
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||    
T  54175019 aagggggagccttggcgcaacgat-aagttgttgtcatgtgactgaa 54175064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 54640511 - 54640473
Alignment:
Q  191 gccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  54640511 gccttggcgcaacggtaaaattgttgtcacgtggctgaa 54640473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 19027804 - 19027849
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||| |||| ||||| |||| |||||||||||||||||||||    
T  19027804 agggggagtcttgacgcaatggtagagttgttgtcacgtgactgaa 19027849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 51865194 - 51865158
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtca 219  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  51865194 aagggggagccttggtgcaacggtaaagttgctgtca 51865158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 19265772 - 19265816
Alignment:
Q  185 gggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  19265772 gggggagcattggcgcaacggtaaagttgttgtcacgtgactgaa 19265816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 28362325 - 28362279
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  28362325 aagggggagccttggcgcaacggtaaagttgttgtcatgtggctgaa 28362279  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 3469354 - 3469313
Alignment:
Q  188 ggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  3469354 ggagccttggcgcaacggtaaagttgttgtcatgtgactgaa 3469313  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 13805058 - 13805103
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||    
T  13805058 agggggagccttggcgcaatggtaaagttgttgtcatgtgactgaa 13805103  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 19266406 - 19266451
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  19266406 agggggagccttggtgcaacggtaaagttgttgtcatgtgactgaa 19266451  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 23419853 - 23419811
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgact 226  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  23419853 agggggagccttggcgcaacggtaaagttgctgtcatgtgact 23419811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 48123663 - 48123618
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||||    
T  48123663 agggggagccttggcgcaacggtaaagttgttatcatgtgtctgaa 48123618  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 42102057 - 42102021
Alignment:
Q  191 gccttggcgcaacggtaaagttgttgtcacgtgactg 227  Q
    |||||||| ||||||||||||||||||||||||||||    
T  42102057 gccttggcacaacggtaaagttgttgtcacgtgactg 42102021  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 43852006 - 43852046
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtga 224  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  43852006 agggggagccttggtgcaacggtaaagttgttgtcatgtga 43852046  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 21220137 - 21220104
Alignment:
Q  196 ggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||| ||||||||||||||||||||||||||    
T  21220137 ggcgcaatggtaaagttgttgtcacgtgactgaa 21220104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 4000862 - 4000826
Alignment:
Q  186 ggggagccttggcgcaacggtaaagttgttgtcacgt 222  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  4000862 ggggagccttggcgcaacgataaaattgttgtcacgt 4000826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 36267931 - 36267903
Alignment:
Q  191 gccttggcgcaacggtaaagttgttgtca 219  Q
    |||||||||||||||||||||||||||||    
T  36267931 gccttggcgcaacggtaaagttgttgtca 36267903  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 12889381 - 12889427
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  12889381 aagggggagccttggcacaacggtaaagttgttgtcacgtgagtgaa 12889427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 13905159 - 13905113
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||    
T  13905159 aagggggaaccttggcgcaacggtaaagttgttgtcatgtgactgaa 13905113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 7947552 - 7947506
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||||||||||||| |||  ||||||||||    
T  7947552 aagggggagccttggcgcaacggtaaagttggtgttgcgtgactgaa 7947506  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 11849015 - 11849056
Alignment:
Q  188 ggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||| |||||||||||||||| ||||||||||||||||    
T  11849015 ggagccttagcgcaacggtaaagttattgtcacgtgactgaa 11849056  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 39301078 - 39301124
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||    
T  39301078 aagggggagccttggcgcaacggtaaagttgttgtcatgttactgaa 39301124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 209108 - 209064
Alignment:
Q  182 caagggggagccttggcgcaacggtaaagttgttgtcacgtgact 226  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  209108 caagggggagccttggcgcagcggtaaagttgttgtcatgtgact 209064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 43574551 - 43574598
Alignment:
Q  182 caagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  43574551 caaggggtagccttggcgcaatgataaagttgttgtcacgtgactgaa 43574598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 10634326 - 10634280
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||||    
T  10634326 aaggaggagccttggcgcaacggtgaagttgttgtcaagtgactgaa 10634280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 39079946 - 39079904
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgac 225  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  39079946 aagggtgagccttggcgcaacggtaaagttgttgtcatgtgac 39079904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 15173867 - 15173824
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgact 226  Q
    ||||| ||||||||| || |||||||||||||||||||||||||    
T  15173867 aagggtgagccttggagcgacggtaaagttgttgtcacgtgact 15173824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 23974744 - 23974779
Alignment:
Q  192 ccttggcgcaacggtaaagttgttgtcacgtgactg 227  Q
    |||||||||||||||||||||||||||| |||||||    
T  23974744 ccttggcgcaacggtaaagttgttgtcatgtgactg 23974779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 31694290 - 31694243
Alignment:
Q  181 tcaagggggagccttggcgcaacggtaaagttgttgtcacgtgactga 228  Q
    |||| ||||||  |||||||||| ||||||||||||||||||||||||    
T  31694290 tcaaaggggagttttggcgcaacagtaaagttgttgtcacgtgactga 31694243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 3771296 - 3771342
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    |||||||||| |||||||||| |||| |||||| |||||||||||||    
T  3771296 aagggggagcattggcgcaacagtaatgttgttctcacgtgactgaa 3771342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 19143117 - 19143079
Alignment:
Q  188 ggagccttggcgcaacggtaaagttgttgtcacgtgact 226  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  19143117 ggagccttggcgcaatggtaaaattgttgtcacgtgact 19143079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 24903875 - 24903830
Alignment:
Q  184 agggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||||||| ||| | |||||||||| |||||||||||||||||||    
T  24903875 agggggagctttgacacaacggtaaatttgttgtcacgtgactgaa 24903830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 2838729 - 2838777
Alignment:
Q  180 ttcaagggggagccttggcgcaac-ggtaaagttgttgtcacgtgactg 227  Q
    ||||||||| | |||||||||||| |||||||||||||||| |||||||    
T  2838729 ttcaaggggtaaccttggcgcaaccggtaaagttgttgtcatgtgactg 2838777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 47063 - 47017
Alignment:
Q  183 aagggggagccttggcgcaacggtaaagttgttgtcacgtgactgaa 229  Q
    ||||| ||||||||||||||  ||||||||||||||| |||||||||    
T  47063 aagggagagccttggcgcaatagtaaagttgttgtcaggtgactgaa 47017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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