View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_61 (Length: 275)
Name: NF0526_low_61
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 29419491 - 29419295
Alignment:
| Q |
13 |
aatatgagaaaacagaacacacaacatattctgaaattgattcttacttaaaattttacaacacccgcaggatcaaaattaaaacctatcgtagatgttt |
112 |
Q |
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| T |
29419491 |
aatatgagaaaacagaacacacaacatattctgaaattgattcttacttaaaattttacaacacccgcaggatcaaaattaaaacctatgatagatgttt |
29419392 |
T |
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| Q |
113 |
tacttttatacactggtacacattatttatgacattcaacatgtttagtttctgaaataagtnnnnnnnnttacaggacattcatccgagccttcgt |
209 |
Q |
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| T |
29419391 |
tacttttatacactggtacacattatttatgacattcaacatgtttagtttctgaaataagtaaaaaaaattacaggacattcatccgagccttcgt |
29419295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 24338236 - 24338044
Alignment:
| Q |
13 |
aatatgagaaaacagaacacacaacatattctgaaattgattcttacttaaaattttacaacacccgcaggatcaaaattaaaacctatcgtagatgttt |
112 |
Q |
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||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24338236 |
aatatgacaaaacagaacacacaacatattctgaaattgcttcttacttaaaattttacaacacccgcaggatcaaaattaaaaccttcggtagatgttt |
24338137 |
T |
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| Q |
113 |
tacttttatacactggtacacattatttatgacattcaacatgtttagtttctgaaataagtnnnnnnnnttacaggacattcatccgagcct |
205 |
Q |
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| T |
24338136 |
tacttttatacactggtacacattatttttaacattcaacacgtttagtttctaaaataagtaaaaaaaattacaggacattcatctgagcct |
24338044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 24412795 - 24412635
Alignment:
| Q |
13 |
aatatgagaaaacagaacacacaacatattctgaaattgattcttacttaaaattttacaacacccgcaggatcaaaattaaaacctatcgtagatgttt |
112 |
Q |
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||||||| |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||| |||| || ||||||||| |
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| T |
24412795 |
aatatgacaaaacagaacacacaacatattctaaaattgcttcttacttgaaattttacaacacccgcagcatcaaaatttaaacatactatagatgttt |
24412696 |
T |
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| Q |
113 |
tacttttatac---actggtacacattatttatgacattcaacatgtttagtttctgaaat |
170 |
Q |
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||||| ||||| ||| ||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
24412695 |
tacttgtatactctactagtacacattatttttaacattcaacatgtttagtttctgaaat |
24412635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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