View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_63 (Length: 271)

Name: NF0526_low_63
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_63
NF0526_low_63
[»] chr1 (4 HSPs)
chr1 (27-237)||(7093499-7093709)
chr1 (79-209)||(44508245-44508376)
chr1 (76-217)||(15962297-15962439)
chr1 (77-180)||(31067109-31067211)
[»] chr8 (8 HSPs)
chr8 (27-220)||(25246940-25247130)
chr8 (29-215)||(33828203-33828389)
chr8 (92-215)||(16366830-16366954)
chr8 (93-222)||(29191136-29191266)
chr8 (79-180)||(42664177-42664278)
chr8 (79-222)||(41877407-41877552)
chr8 (114-209)||(26534380-26534476)
chr8 (79-200)||(10207979-10208094)
[»] chr4 (8 HSPs)
chr4 (29-218)||(1101062-1101250)
chr4 (81-209)||(55250447-55250576)
chr4 (79-207)||(47668932-47669061)
chr4 (76-208)||(1838565-1838698)
chr4 (78-180)||(29857426-29857529)
chr4 (147-223)||(34028093-34028168)
chr4 (84-183)||(20447797-20447896)
chr4 (76-138)||(46964032-46964092)
[»] scaffold0406 (1 HSPs)
scaffold0406 (49-229)||(12647-12827)
[»] chr7 (4 HSPs)
chr7 (27-209)||(47235876-47236055)
chr7 (80-215)||(19910096-19910229)
chr7 (78-221)||(6036749-6036893)
chr7 (103-222)||(34821135-34821255)
[»] chr2 (9 HSPs)
chr2 (35-206)||(45040059-45040229)
chr2 (78-209)||(18061151-18061283)
chr2 (78-215)||(29686162-29686300)
chr2 (92-222)||(19865861-19865993)
chr2 (92-222)||(19870762-19870894)
chr2 (92-222)||(19875663-19875795)
chr2 (79-202)||(43559636-43559760)
chr2 (79-130)||(33226656-33226707)
chr2 (93-137)||(5608577-5608621)
[»] chr5 (5 HSPs)
chr5 (29-215)||(14144862-14145051)
chr5 (78-215)||(15471101-15471239)
chr5 (93-222)||(35951967-35952097)
chr5 (79-210)||(29790571-29790701)
chr5 (76-222)||(33140329-33140474)
[»] chr3 (9 HSPs)
chr3 (79-222)||(39650397-39650541)
chr3 (94-222)||(45483804-45483934)
chr3 (93-222)||(26445908-26446037)
chr3 (77-202)||(46091832-46091958)
chr3 (79-221)||(33087892-33088034)
chr3 (93-202)||(570950-571062)
chr3 (81-174)||(28521495-28521589)
chr3 (28-177)||(28050706-28050856)
chr3 (79-200)||(28146815-28146938)
[»] scaffold0257 (1 HSPs)
scaffold0257 (81-232)||(16484-16637)
[»] scaffold0005 (1 HSPs)
scaffold0005 (29-215)||(270235-270420)
[»] chr6 (3 HSPs)
chr6 (69-218)||(4017039-4017189)
chr6 (27-217)||(13325488-13325677)
chr6 (92-128)||(20921404-20921440)
[»] scaffold0258 (1 HSPs)
scaffold0258 (81-229)||(18108-18257)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 7093709 - 7093499
Alignment:
Q  27 cgaagaatataaaagcaaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaataga 126  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7093709 cgaagaaaataaaagcaaacaatagttatttgtaaaatgataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaataga 7093610  T
Q  127 ttatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagctacgtataaaactatgcta 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7093609 ttatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtatctacgtataaaactatgcta 7093510  T
Q  227 gttgttaaaga 237  Q
    |||||||||||    
T  7093509 gttgttaaaga 7093499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 44508245 - 44508376
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcatta-tttcttgatatcatctctgtttgaaccaacaaaattgtttgg 177  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||||||||| || ||| || | |||||| || ||| |||||| |||||||||||     
T  44508245 agttttaagaagtcaaatttatctataattgacactaaattaaatagattatcaatattttattaacatcatccctctttaaaccaataaaattgtttga 44508344  T
Q  178 agtagttcaataatatattaatggggtagcta 209  Q
    ||||| | ||||||| ||||||||| ||||||    
T  44508345 agtagctgaataatacattaatgggatagcta 44508376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 15962439 - 15962297
Alignment:
Q  76 tggagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtt 174  Q
    ||||||| ||||||   |||| |||| |||||||||||||||||||||| ||||| | ||||| |   ||||| ||||  ||| |||||||||||||| |    
T  15962439 tggagttgtaagaacttaaatgtatccataattgacactaaactaaatatattatgaatatttgtgcaatatcttctccctttaaaccaacaaaattgat 15962340  T
Q  175 tggagtagttcaataatatattaatggggtagctacgtataaa 217  Q
    |||||||    ||||||||||||||| ||||||||| ||||||    
T  15962339 tggagtaaccaaataatatattaatgaggtagctacatataaa 15962297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 31067109 - 31067211
Alignment:
Q  77 ggagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgttt 175  Q
    |||||||| ||||| |||||  ||| ||||||||||||||| ||||| |||||||| | ||| | | |||| |||||||||| |||||| ||||||||||    
T  31067109 ggagtttttagaagtcaaat--atccataattgacactaaattaaattgattatcaatgtttttataatattatctctgttttaaccaataaaattgttt 31067206  T
Q  176 ggagt 180  Q
     ||||    
T  31067207 agagt 31067211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 25246940 - 25247130
Alignment:
Q  27 cgaagaatataaaagcaaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaataga 126  Q
    ||||||| |||||||| ||| ||  |||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  25246940 cgaagaaaataaaagctaactat--ttatttgtaaaa-gatgagttctatggagttttaagaagacaaatttatctataattgacactaaactaaatata 25247036  T
Q  127 ttatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagctacgtataaaact 220  Q
    |||||| | ||| || |||| || ||| ||| || |||||||||||||||||||||   ||||||||||||||||||||||||  |||||||||    
T  25247037 ttatcaatttttgttaatataatatctctttaaatcaacaaaattgtttggagtagccaaataatatattaatggggtagctatatataaaact 25247130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 33828389 - 33828203
Alignment:
Q  29 aagaatataaaagcaaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaatagatt 128  Q
    ||||| |||||||| |||||||||||||| ||||| | | || |||  |||||||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  33828389 aagaaaataaaagctaacaatagttatttataaaa-gttgagctctaaggagtttttagaagtcaaatttatccataattgacactaaactaaatagatt 33828291  T
Q  129 atcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagctacgtata 215  Q
    |||| ||||| | | ||||||||| | ||| |||||||||||||||||||||||||  || ||||| |||||||||||||||| ||||    
T  33828290 atcaatatttttataatatcatctttattttaaccaacaaaattgtttggagtagtcaaaaaatatcttaatggggtagctacatata 33828203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 16366830 - 16366954
Alignment:
Q  92 caaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataa 190  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||| | | ||||||||||| ||| |||||||||||||||||||||||||  |||||    
T  16366830 caaatttatctataattaacactaaactaaatagattatcaatatttttataatatcatctctattttaaccaacaaaattgtttggagtagtcaaataa 16366929  T
Q  191 tatattaatggggtagctacgtata 215  Q
     ||  ||||||||||| ||| ||||    
T  16366930 catcataatggggtagttacatata 16366954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 29191136 - 29191266
Alignment:
Q  93 aaatttatcaataattgacactaaactaaatagattatcattatttcttga-tatcatctctgtttgaaccaacaaaattgtttggagtagttcaataat 191  Q
    ||||||||| ||||||||||| |||||||||| | ||||| ||||| |  | |||||||||| ||| ||||||||||||||||||||||||   ||||||    
T  29191136 aaatttatccataattgacaccaaactaaatatactatcaatatttgtgcaatatcatctctttttaaaccaacaaaattgtttggagtaggcaaataat 29191235  T
Q  192 atattaatggggtagctacgtataaaactat 222  Q
    |||||||||| |||||||| |||||| ||||    
T  29191236 atattaatggagtagctacatataaacctat 29191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 42664177 - 42664278
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttgga 178  Q
    |||||||| ||| |||||||||  |||||||||||||||||||||||||||| | ||||| || | |||| | || ||| ||||||||||||||||||||    
T  42664177 agttttaaaaagtcaaatttatttataattgacactaaactaaatagattataagtattttttaaaatcaccactttttaaaccaacaaaattgtttgga 42664276  T
Q  179 gt 180  Q
    ||    
T  42664277 gt 42664278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 41877552 - 41877407
Alignment:
Q  79 agttttaagaagacaaatttatcaataa--ttgacactaaactaaatagattatcattatttc-ttgatatcatctctgtttgaaccaacaaaattgttt 175  Q
    |||||||||||| |||||||||  |||   |||||| ||||||||||| ||||| | |||||  || | ||| ||||| ||| |||||||||||||||||    
T  41877552 agttttaagaagtcaaatttatatatatacttgacattaaactaaataaattattaatattttattaagatcgtctcttttt-aaccaacaaaattgttt 41877454  T
Q  176 ggagtagttcaataatatattaatggggtagctacgtataaaactat 222  Q
    |||||||   | ||||||||||||||||||||||| || ||||||||    
T  41877453 ggagtagccaagtaatatattaatggggtagctacatacaaaactat 41877407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 26534476 - 26534380
Alignment:
Q  114 taaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagcta 209  Q
    ||||||||||||||||||| ||||| | | ||| ||||||| ||| ||||||||||||||||||||||     |||||||| |||||||||||||||    
T  26534476 taaactaaatagattatcaatatttttataataccatctctattttaaccaacaaaattgtttggagtgaccaaataatatcttaatggggtagcta 26534380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 10207979 - 10208094
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttgga 178  Q
    |||||||||||| |||||||||    ||||| ||| |||||||||| ||||||| |||||  | |||  |||||| ||| ||||||||||||||||||||    
T  10207979 agttttaagaagtcaaatttat----aattggcacaaaactaaataaattatcaatattt--taatagtatctctctttaaaccaacaaaattgtttgga 10208072  T
Q  179 gtagttcaataatatattaatg 200  Q
    |||||  || ||||||| ||||    
T  10208073 gtagtcaaacaatatatcaatg 10208094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 218
Target Start/End: Original strand, 1101062 - 1101250
Alignment:
Q  29 aagaatataaaagcaaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaatagatt 128  Q
    ||||| |||||||| | |||||||||||||||||| ||| || ||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  1101062 aagaaaataaaagctaccaatagttatttgtaaaa-gatgagctctattgagttttaagaagacaaatttatctatagttgacactaaactaaatagatt 1101160  T
Q  129 atcattatttcttgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagctacgtataaaa 218  Q
    |||| | ||| || |||| || ||| ||||||||||| ||||||||||||||||   |||||||||||||||||| |||||  |||||||    
T  1101161 atcaatttttgttaatataatatctctttgaaccaactaaattgtttggagtagccaaataatatattaatgggggagctatatataaaa 1101250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 55250576 - 55250447
Alignment:
Q  81 ttttaagaagacaaatttatcaataattgacactaaactaaatagattatcatta-tttcttgatatcatctctgtttgaaccaacaaaattgtttggag 179  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||| || | || ||| || |||||||||||||||||||||| ||    
T  55250576 ttttaagaagtcaaatttatctataattgacactaaactaaatagattatcaatattttattaacattatccctctttgaaccaacaaaattgtttgaag 55250477  T
Q  180 tagttcaataatatattaatggggtagcta 209  Q
    ||||  ||||||||||||||||||||||||    
T  55250476 tagtcaaataatatattaatggggtagcta 55250447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 47668932 - 47669061
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcatta-tttcttgatatcatctctgtttgaaccaacaaaattgtttgg 177  Q
    |||||||||||  |||||||||| ||||||||||||||| |||||||||||||| || ||| || | || |||  | ||| |||||||||||||||| ||    
T  47668932 agttttaagaaatcaaatttatctataattgacactaaattaaatagattatcaatattttattaacattatccatctttaaaccaacaaaattgttcgg 47669031  T
Q  178 agtagttcaataatatattaatggggtagc 207  Q
    ||||||  ||||||||||||||||||||||    
T  47669032 agtagtcaaataatatattaatggggtagc 47669061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 1838698 - 1838565
Alignment:
Q  76 tggagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttgat-atcatctctgtttgaaccaacaaaattgtt 174  Q
    ||||| |||||||||  ||||||||| ||| || ||| |||| |||||| ||||||| ||||| |  || |||||||||  |||| ||||||||||||||    
T  1838698 tggaggtttaagaagtaaaatttatccatagttaacattaaagtaaatatattatcaatatttatgtattatcatctctcattgatccaacaaaattgtt 1838599  T
Q  175 tggagtagttcaataatatattaatggggtagct 208  Q
    |||||||||  |||||||||||||||| ||||||    
T  1838598 tggagtagtcaaataatatattaatggagtagct 1838565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 180
Target Start/End: Original strand, 29857426 - 29857529
Alignment:
Q  78 gagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttg 176  Q
    ||||||| ||||| ||| |||||| |||||| ||||||||||||||||||||||| ||||| | |   ||||||||||||| ||||||||||||| ||||    
T  29857426 gagtttttagaagtcaattttatccataattaacactaaactaaatagattatcaatatttttatagaatcatctctgttttaaccaacaaaattatttg 29857525  T
Q  177 gagt 180  Q
    ||||    
T  29857526 gagt 29857529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 34028093 - 34028168
Alignment:
Q  147 catctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagctacgtataaaactatg 223  Q
    ||||||| |||||||| ||||||||||||| ||||| ||||  |||||||||| |||||| ||| ||||||||||||    
T  34028093 catctctctttgaacccacaaaattgtttgaagtag-tcaaatatatattaatagggtagttacatataaaactatg 34028168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 20447797 - 20447896
Alignment:
Q  84 taagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttggagtagt 183  Q
    ||||||| ||||||||||  |||||||||||||  ||||||||| |||||  ||| || | |||||| || ||| || |||||||||||||| |||||||    
T  20447797 taagaagtcaaatttatctttaattgacactaacttaaatagatcatcatattttattaacatcatccctctttcaatcaacaaaattgtttagagtagt 20447896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 46964092 - 46964032
Alignment:
Q  76 tggagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattattt 138  Q
    ||||||||||||||| |||||||||| ||||||||| ||  |||||||| ||||||| |||||    
T  46964092 tggagttttaagaagtcaaatttatccataattgactct--actaaataaattatcaatattt 46964032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 49 - 229
Target Start/End: Original strand, 12647 - 12827
Alignment:
Q  49 tagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttgatatca 148  Q
    |||||||||||||||| || || ||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| | ||| || |||| |    
T  12647 tagttatttgtaaaaa-atgagctctatggagttttaagaagacaaatttatccatacttgacactaaactaaatagaatatcaatttttattaatataa 12745  T
Q  149 tctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagctacgtataaaac-tatgctagtt 229  Q
    | ||| ||||||||||||||||||||||||||||   ||||||||||| ||||||||||||  ||| |||| ||||||||||    
T  12746 tatctctttgaaccaacaaaattgtttggagtagcaaaataatatattcatggggtagctatatattaaacttatgctagtt 12827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 47236055 - 47235876
Alignment:
Q  27 cgaagaatataaaagcaaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaataga 126  Q
    ||||||| |||||||| ||| ||  |||||||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47236055 cgaagaaaataaaagctaactat--ttatttgtaaaa-gatgagttctatggagttttaagaagacaaatttatctataattgacactaaactaaataga 47235959  T
Q  127 ttatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagcta 209  Q
    |||||| | ||| || |||| || ||| ||| || ||||||||||||||||| |||   |||||||||||||||| |||||||    
T  47235958 ttatcaatttttgttaatataatatctctttaaatcaacaaaattgtttggaatagccaaataatatattaatggagtagcta 47235876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 19910229 - 19910096
Alignment:
Q  80 gttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttgga 178  Q
    ||||| ||||| |||||||||| ||||   ||||||||| ||||||||||||| ||||| | | ||||||||||||||| ||||||||||||||||||||    
T  19910229 gtttttagaagtcaaatttatccataa---acactaaacaaaatagattatcaatatttttataatatcatctctgttttaaccaacaaaattgtttgga 19910133  T
Q  179 gtagttcaataatatattaatggggtagctacgtata 215  Q
    ||||   |||||||| |||||||||||||||||||||    
T  19910132 gtagccaaataatattttaatggggtagctacgtata 19910096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 6036893 - 6036749
Alignment:
Q  78 gagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttg 176  Q
    |||||||||||||  ||||||||| ||||||| || |||| |  ||| ||| | | ||||| | | ||||||||||  ||||||||||||||||||||||    
T  6036893 gagttttaagaagtaaaatttatccataattgtcattaaatttgatatatttttaatatttgtgtaatatcatctccctttgaaccaacaaaattgtttg 6036794  T
Q  177 gagtagttcaataatatattaatggggtagctacgtataaaacta 221  Q
    ||||||   |||||||  |||||||||||||||| ||||||||||    
T  6036793 gagtagccgaataataatttaatggggtagctacatataaaacta 6036749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 34821135 - 34821255
Alignment:
Q  103 ataattgacactaaactaaatagattatcattatt-tcttgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatgg 201  Q
    |||||||||||| ||||||||||||||||| |||| |  | | ||| || || ||| ||||||||||||||||||||||| |  | |||||||| |||||    
T  34821135 ataattgacacttaactaaatagattatcaatattatactaacatcgtccctctttaaaccaacaaaattgtttggagtaatcaagtaatatatcaatgg 34821234  T
Q  202 ggtagctacgtataaaactat 222  Q
    ||||||||| || ||||||||    
T  34821235 ggtagctacatacaaaactat 34821255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 45040059 - 45040229
Alignment:
Q  35 ataaaagcaaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcatt 134  Q
    |||||||  ||||||||||||||||||||  || || ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |    
T  45040059 ataaaaggtaacaatagttatttgtaaaat-atgagctctatggagttttaagaagacaaatttatctataattgatactaaactaaatagattatcaat 45040157  T
Q  135 atttcttgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtag 206  Q
     ||| || |||| || ||| |||||| |||||||||||||||||||   | |||||||||||||||||||||    
T  45040158 ttttgttaatataatatctctttgaaacaacaaaattgtttggagtgactaaataatatattaatggggtag 45040229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 18061151 - 18061283
Alignment:
Q  78 gagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatt-tcttgatatcatctctgtttgaaccaacaaaattgtttg 176  Q
    ||||||||||||| |||||||||  ||||| |||||||||||||||||||||| | |||| | || ||| ||||||| ||||||||||| ||||||||||    
T  18061151 gagttttaagaagtcaaatttattcataatggacactaaactaaatagattattaatattattttaatagcatctctctttgaaccaaccaaattgtttg 18061250  T
Q  177 gagtagttcaataatatattaatggggtagcta 209  Q
    |||||    ||||||||||||||||||||||||    
T  18061251 gagtaaccaaataatatattaatggggtagcta 18061283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 215
Target Start/End: Original strand, 29686162 - 29686300
Alignment:
Q  78 gagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttg 176  Q
    ||||||| ||||| ||| |||||| ||||||||||||||| |||||||||||||| ||||| | |  |||||||||||||| ||||||||||||| ||||    
T  29686162 gagtttttagaagtcaattttatccataattgacactaaaataaatagattatcaatatttttatagtatcatctctgttttaaccaacaaaattatttg 29686261  T
Q  177 gagtagttcaataatatattaatggggtagctacgtata 215  Q
     |||     |||||||| |||||||||||||||||||||    
T  29686262 aagtgaccaaataatatcttaatggggtagctacgtata 29686300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 19865993 - 19865861
Alignment:
Q  92 caaatttatcaataattgacactaaactaaatagattatcattatttc-ttgatatcatctctgtttgaaccaacaaaa-ttgtttggagtagttcaata 189  Q
    |||||||||| |||||||| ||||||||||||||||||||  |||||  |||||||||||  | ||| ||||||||||| |||||||||||||   ||||    
T  19865993 caaatttatctataattgatactaaactaaatagattatctatattttattgatatcatccttctttaaaccaacaaaaattgtttggagtagccaaata 19865894  T
Q  190 atatattaatggggtagctacgtataaaactat 222  Q
    |||||| |||||||||||||| || ||||||||    
T  19865893 atatatcaatggggtagctacatacaaaactat 19865861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 19870894 - 19870762
Alignment:
Q  92 caaatttatcaataattgacactaaactaaatagattatcattatttc-ttgatatcatctctgtttgaaccaacaaaa-ttgtttggagtagttcaata 189  Q
    |||||||||| |||||||| ||||||||||||||||||||  |||||  |||||||||||  | ||| ||||||||||| |||||||||||||   ||||    
T  19870894 caaatttatctataattgatactaaactaaatagattatctatattttattgatatcatccttctttaaaccaacaaaaattgtttggagtagccaaata 19870795  T
Q  190 atatattaatggggtagctacgtataaaactat 222  Q
    |||||| |||||||||||||| || ||||||||    
T  19870794 atatatcaatggggtagctacatacaaaactat 19870762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 19875795 - 19875663
Alignment:
Q  92 caaatttatcaataattgacactaaactaaatagattatcattatttc-ttgatatcatctctgtttgaaccaacaaaa-ttgtttggagtagttcaata 189  Q
    |||||||||| |||||||| ||||||||||||||||||||  |||||  |||||||||||  | ||| ||||||||||| |||||||||||||   ||||    
T  19875795 caaatttatctataattgatactaaactaaatagattatctatattttattgatatcatccttctttaaaccaacaaaaattgtttggagtagccaaata 19875696  T
Q  190 atatattaatggggtagctacgtataaaactat 222  Q
    |||||| |||||||||||||| || ||||||||    
T  19875695 atatatcaatggggtagctacatacaaaactat 19875663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 43559760 - 43559636
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttgata-tcatctctgtttgaaccaacaaaattgtttgg 177  Q
    |||||||| ||| |||||||||  ||||||||||||||||||| |||||||| | ||||| || | | | |||||| ||| |||||||||||||||||||    
T  43559760 agttttaacaagtcaaatttatttataattgacactaaactaagtagattataagtatttttttaaaataatctctctttaaaccaacaaaattgtttgg 43559661  T
Q  178 agtagttcaataatatattaatggg 202  Q
    |||||   |||||||||||||||||    
T  43559660 agtagccaaataatatattaatggg 43559636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 33226656 - 33226707
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattat 130  Q
    |||||||| ||| |||||||||  ||||||||||||||||||||||||||||    
T  33226656 agttttaacaagtcaaatttatttataattgacactaaactaaatagattat 33226707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 5608621 - 5608577
Alignment:
Q  93 aaatttatcaataattgacactaaactaaatagattatcattatt 137  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||||    
T  5608621 aaatttatctataattgacactaaactaaatatattatcaatatt 5608577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 14144862 - 14145051
Alignment:
Q  29 aagaatataaaagcaaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataatt---gacactaaactaaatag 125  Q
    ||||| |||||||| ||||||| |||||| ||||| | |||| |||  |||||||| ||| | |||||||||| ||||||   |||||||||||||||||    
T  14144862 aagaaaataaaagctaacaatacttatttataaaa-gttaagctctaaggagtttttagaggtcaaatttatccataattattgacactaaactaaatag 14144960  T
Q  126 attatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagctacgtata 215  Q
    ||||||| ||||| | | ||||||||| ||||| ||||||||||||| |||||||| ||  |||||||| |||||| ||||||||| ||||    
T  14144961 attatcaatatttttataatatcatctatgttttaaccaacaaaattatttggagtggtcaaataatatcttaatgaggtagctacatata 14145051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 215
Target Start/End: Original strand, 15471101 - 15471239
Alignment:
Q  78 gagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttg 176  Q
    ||||||| ||||  |||||||||| |||||||||||||||||||||||||||||| ||||| | |  |||||||||||||| ||||||||||||||||||    
T  15471101 gagtttttagaattcaaatttatccataattgacactaaactaaatagattatcaatatttttgtattatcatctctgttttaaccaacaaaattgtttg 15471200  T
Q  177 gagtagttcaataatatattaatggggtagctacgtata 215  Q
    |||||    |||||||| || ||| ||||||||| ||||    
T  15471201 gagtaaccaaataatattttgatgaggtagctacatata 15471239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 35951967 - 35952097
Alignment:
Q  93 aaatttatcaataattgacactaaactaaatagattatcattatttcttga-tatcatctctgtttgaaccaacaaaattgtttggagtagttcaataat 191  Q
    ||||||||| |||||||||||||||||||||| ||||||| ||||| || | |||||||||| ||| ||||||||||||||||||||||||   ||||||    
T  35951967 aaatttatccataattgacactaaactaaatatattatcaatatttgttcaatatcatctctttttaaaccaacaaaattgtttggagtagccaaataat 35952066  T
Q  192 atattaatggggtagctacgtataaaactat 222  Q
    |||| ||||| |||| ||| |||||| ||||    
T  35952067 atatcaatggagtagttacatataaacctat 35952097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 210
Target Start/End: Complemental strand, 29790701 - 29790571
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttgga 178  Q
    |||||||| ||| ||||||||   ||||||||||||| |||||||||||||| | ||||| || | ||||||||| ||| ||||||||||||||||||||    
T  29790701 agttttaacaagtcaaatttacttataattgacactagactaaatagattataagtattt-ttaaaatcatctctttttaaaccaacaaaattgtttgga 29790603  T
Q  179 gtagttcaataatatattaatggggtagctac 210  Q
    || |   ||||||||||||||| |||||||||    
T  29790602 gtggccaaataatatattaatgtggtagctac 29790571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 33140329 - 33140474
Alignment:
Q  76 tggagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttga-tatcatctctgtttgaaccaacaaaattgtt 174  Q
    ||||||| ||||||   ||||||||| |||||||||||||  ||||||| ||||||  || || |  | |||||||||| ||| |||||| |||||||||    
T  33140329 tggagttgtaagaacttaaatttatccataattgacacta--ctaaatatattatcgatacttgtgcaatatcatctctctttaaaccaataaaattgtt 33140426  T
Q  175 tggagtagttcaataatatattaatggggtagctacgtataaaactat 222  Q
    ||||||||   ||||||||||||||||| || |||| |||||| ||||    
T  33140427 tggagtagccaaataatatattaatgggataactacatataaacctat 33140474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 39650541 - 39650397
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttc-ttgatatcatctctgtttgaaccaacaaaattgtttgg 177  Q
    |||||||||||| |||||| ||| ||||||||| ||||| |||||||||||||| |||||  || |||| ||| || ||| |||||||||||||||||||    
T  39650541 agttttaagaagtcaaattcatctataattgacgctaaattaaatagattatcaatattttattaatattatccctctttaaaccaacaaaattgtttgg 39650442  T
Q  178 agtagttcaataatatattaatggggtagctacgtataaaactat 222  Q
    |||||   | ||||||||||||||| |||| ||||| ||||||||    
T  39650441 agtagccaagtaatatattaatgggatagcaacgtacaaaactat 39650397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 45483804 - 45483934
Alignment:
Q  94 aatttatcaataattgacactaaactaaatagattatcattatttc-ttgatatcatctctgtttgaaccaacaaaa-ttgtttggagtagttcaataat 191  Q
    |||||||| |||||||| ||||||||||||||||||||  |||||  ||||||||||| || ||| ||||||||||| |||||||||||||   ||||||    
T  45483804 aatttatctataattgatactaaactaaatagattatctatattttattgatatcatccctctttaaaccaacaaaaattgtttggagtagccaaataat 45483903  T
Q  192 atattaatggggtagctacgtataaaactat 222  Q
    |||| |||||||||||||| || ||||||||    
T  45483904 atatcaatggggtagctacatacaaaactat 45483934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 222
Target Start/End: Complemental strand, 26446037 - 26445908
Alignment:
Q  93 aaatttatcaataattgacactaaactaaatagattatcattatttcttga-tatcatctctgtttgaaccaacaaaattgtttggagtagttcaataat 191  Q
    ||||||||| ||||||||||| |||||||||| ||||||| ||||| |  | ||| |||||| ||| ||||||||||||||||||||||||    |||||    
T  26446037 aaatttatccataattgacaccaaactaaatatattatcaatatttgtgcaatat-atctctttttaaaccaacaaaattgtttggagtagccagataat 26445939  T
Q  192 atattaatggggtagctacgtataaaactat 222  Q
    ||||||||| ||||||||| |||||| ||||    
T  26445938 atattaatgaggtagctacatataaacctat 26445908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 46091832 - 46091958
Alignment:
Q  77 ggagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgttt 175  Q
    ||||| || ||||| |||||||||| |||||| |||||||||||||| |||||||| ||||| | | |||| |||| ||||| |||||| ||||||||||    
T  46091832 ggagtatttagaagtcaaatttatccataattaacactaaactaaatggattatcaatatttttataatattatctatgttttaaccaataaaattgttt 46091931  T
Q  176 ggagtagttcaataatatattaatggg 202  Q
    |||||||   |||||||| ||||||||    
T  46091932 ggagtagccaaataatatcttaatggg 46091958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 33087892 - 33088034
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcatta-tttcttgatatcatctctgtttgaaccaacaaaattgtttgg 177  Q
    |||||||||||| ||| |||||| |||||||||||||||||||||||||||||| || ||| || |||||| |  | ||||||| ||||||||||||||     
T  33087892 agttttaagaagtcaa-tttatctataattgacactaaactaaatagattatcaatattttattaatatcacccttctttgaactaacaaaattgtttga 33087990  T
Q  178 agtagttcaataatatattaatggggtagctacgtataaaacta 221  Q
    || ||   ||||||||||||||| | || |||  ||||||||||    
T  33087991 agaagccaaataatatattaatgagataactatatataaaacta 33088034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 571062 - 570950
Alignment:
Q  93 aaatttatcaataattgacactaaactaaatagattatcattatttct-tg--atatcatctctgtttgaaccaacaaaattgtttggagtagttcaata 189  Q
    ||||||||| ||||||||||||| |||||||| ||||||| ||| | | ||  ||||||||||| ||| ||||||||||||| ||||||||||   ||||    
T  571062 aaatttatccataattgacactagactaaatatattatcaatatatttatgcaatatcatctctctttaaaccaacaaaattatttggagtagccaaata 570963  T
Q  190 atatattaatggg 202  Q
    |||||||||||||    
T  570962 atatattaatggg 570950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 28521589 - 28521495
Alignment:
Q  81 ttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatt-tcttgatatcatctctgtttgaaccaacaaaattgtt 174  Q
    |||||||||| |||||||||  |||||||| ||||||||||||||||||||| |||| |  | |||| |||||| ||| ||||||||||||||||    
T  28521589 ttttaagaagtcaaatttattcataattgatactaaactaaatagattatcaatattattataatattatctctctttaaaccaacaaaattgtt 28521495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 28050706 - 28050856
Alignment:
Q  28 gaagaatataaaagcaaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaatagat 127  Q
    |||||| |||||||| | |||||||||| | ||||| | | |||||| || || ||||||||   ||||||||| ||||| |||| ||||||||||||||    
T  28050706 gaagaaaataaaagctaccaatagttatctataaaa-gttgagttctatgaagatttaagaaattaaatttatctataatagacattaaactaaatagat 28050804  T
Q  128 tatcattatttcttga-tatcatctctgtttgaacc-aacaaaattgtttgg 177  Q
    ||||  ||||| || | |||||||||| |||||||| |||||| ||||||||    
T  28050805 tatccatatttttttattatcatctctctttgaaccaaacaaatttgtttgg 28050856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 28146815 - 28146938
Alignment:
Q  79 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcatta-tttcttgatatcatctctgtttgaacc-aacaaaattgtttg 176  Q
    |||||| ||||| |||| ||||| ||||||||||||||||||| |||| ||||| || ||| || | | ||||||| |||||||| ||||||||||||||    
T  28146815 agttttcagaagtcaaagttatccataattgacactaaactaattagaatatcaatatttttttaagagcatctctctttgaaccaaacaaaattgtttg 28146914  T
Q  177 gagtagttcaataatatattaatg 200  Q
    | ||| |  || ||||||||||||    
T  28146915 gcgtaatcaaacaatatattaatg 28146938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 16484 - 16637
Alignment:
Q  81 ttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttg--atatcatctctgtttgaaccaacaaaattgtttgga 178  Q
    |||||||||| || ||||||| | |||||| ||||||||||||| ||||||| ||||| ||   |||||||| || ||| ||||||||||||||||||||    
T  16484 ttttaagaagtcagatttatccacaattgatactaaactaaataaattatcaatattttttttaatatcatccctctttaaaccaacaaaattgtttgga 16583  T
Q  179 gtagttcaataatatattaatggggtagctacgtataaaactatgctagttgtt 232  Q
    ||| || ||||||| ||||||||  |||| || |||||||||||| || |||||    
T  16584 gtaattaaataatacattaatggaatagccacatataaaactatgttaattgtt 16637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 270420 - 270235
Alignment:
Q  29 aagaatataaaagcaaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaatagatt 128  Q
    ||||| |||||||| || ||||||||||| ||||| | | || |||  |||||||| | ||| |||||||||  ||||||||||||||||||| ||||||    
T  270420 aagaaaataaaagctaaaaatagttatttataaaa-gttgagctctaaggagtttttaaaagtcaaatttatttataattgacactaaactaagtagatt 270322  T
Q  129 atcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagctacgtata 215  Q
    |||| ||||| | | ||||||||||||||| ||||||  |||||||||| |||||   |||||||| |||||||||||| ||| ||||    
T  270321 atcaatatttttataatatcatctctgttttaaccaa-taaattgtttgaagtagccaaataatatcttaatggggtagttacatata 270235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 4017189 - 4017039
Alignment:
Q  69 agttctttggagttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattat-ttcttgatatcatctctgtttgaaccaacaa 167  Q
    |||||| | ||||||| ||||| |||||||||  |||||| ||||||||||||||||||||  | | | || || |||||||||||  |||||| |||||    
T  4017189 agttctatcgagttttcagaagtcaaatttattcataattaacactaaactaaatagattacaaatgtatttttaatatcatctctccttgaactaacaa 4017090  T
Q  168 aattgtttggagtagttcaataatatattaatggggtagctacgtataaaa 218  Q
    ||||||||| ||| ||| |||||||| | |||||||||||||| |||||||    
T  4017089 aattgtttgaagttgttaaataatatttgaatggggtagctacatataaaa 4017039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 13325488 - 13325677
Alignment:
Q  27 cgaagaatataaaagc-aaacaatagttatttgtaaaaagataagttctttggagttttaagaagacaaatttatcaataattgacactaaactaaatag 125  Q
    ||||||| |||||||  ||| ||||||||||| ||||||  ||| || | ||||||| ||||||   ||||||||| |||||| |||||||||||||||     
T  13325488 cgaagaaaataaaagttaaataatagttatttataaaaatttaactt-tatggagttataagaacttaaatttatctataatttacactaaactaaatat 13325586  T
Q  126 attatcattatttcttgatatcatctctgtttgaaccaacaaaattgtttggagtagttcaataatatattaatggggtagctacgtataaa 217  Q
    ||||| ||||||| |  ||||||||||| ||| ||||| ||||||||||   ||||    |||||||||||||| |||||||||| ||||||    
T  13325587 attattattatttgtgcatatcatctctctttaaaccatcaaaattgttaaaagtaaccaaataatatattaat-gggtagctacatataaa 13325677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 20921440 - 20921404
Alignment:
Q  92 caaatttatcaataattgacactaaactaaatagatt 128  Q
    |||||||||  ||||||||||||||||||||||||||    
T  20921440 caaatttatttataattgacactaaactaaatagatt 20921404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 18108 - 18257
Alignment:
Q  81 ttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttct-tgatatcatctctgtttgaaccaacaaaattgtttggag 179  Q
    ||||||||||  ||||| ||| |||||||||| ||||||||||| ||||| | ||||| | | |||||||||   ||| ||||||||||||| |||||||    
T  18108 ttttaagaagtaaaattcatctataattgacaataaactaaatatattattaatatttgtgtaatatcatcttcctttaaaccaacaaaattatttggag 18207  T
Q  180 tagttcaataatatattaatggggtagctacgtataaaactatgctagtt 229  Q
    |||   ||||||||||||||| ||||||||| ||| ||| ||| ||||||    
T  18208 tagacaaataatatattaatgaggtagctacatatcaaattatactagtt 18257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 495 times since January 2019
Visitors: 3651