View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_64 (Length: 270)

Name: NF0526_low_64
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_64
NF0526_low_64
[»] chr4 (4 HSPs)
chr4 (96-201)||(2873719-2873824)
chr4 (20-77)||(2873817-2873874)
chr4 (107-182)||(2901380-2901455)
chr4 (107-171)||(2883510-2883574)
[»] chr2 (3 HSPs)
chr2 (112-187)||(44214023-44214098)
chr2 (112-171)||(44237002-44237061)
chr2 (112-140)||(44226188-44226216)
[»] chr7 (2 HSPs)
chr7 (112-170)||(39334417-39334475)
chr7 (112-170)||(39568129-39568187)
[»] chr1 (1 HSPs)
chr1 (106-170)||(2164586-2164650)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 2873824 - 2873719
Alignment:
Q  96 atgtagtttctttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcagatagcaaatctatg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873824 atgtagtttctttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcagatagcaaatctatg 2873725  T
Q  196 catcac 201  Q
    ||||||    
T  2873724 catcac 2873719  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 2873874 - 2873817
Alignment:
Q  20 tgagatgaatatatattattacatcaaatgctatagaaatatatagcataacgtagtt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2873874 tgagatgaatatatattattacatcaaatgctatagaaatatatagcataatgtagtt 2873817  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 2901380 - 2901455
Alignment:
Q  107 ttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcaga 182  Q
    |||| ||||||||  ||||||||||||||||||||||  | ||||||||||| |||||||||||| | ||||||||    
T  2901380 ttcttaccttcataaagacatcaatatctgggtctggcttaatctttgcttccttttctcttctagacaactcaga 2901455  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 2883574 - 2883510
Alignment:
Q  107 ttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttcta 171  Q
    |||||||||||||| ||||||||| ||||||||||||  | || |||||||| ||||||||||||    
T  2883574 ttctcaccttcatgaagacatcaacatctgggtctggcttaatatttgcttccttttctcttcta 2883510  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 44214023 - 44214098
Alignment:
Q  112 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttctacataactcagatagca 187  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||| | || ||||||||| | | |||||||||||    
T  44214023 accttcatgtagacatcaatatctgggtcaggcttgatatttgctaccttctctcttctagaaagctcagatagca 44214098  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 44237002 - 44237061
Alignment:
Q  112 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttcta 171  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||| | || |||||||||    
T  44237002 accttcatgtagacatcaatatctgggtcaggcttgatatttgctgccttctctcttcta 44237061  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 44226188 - 44226216
Alignment:
Q  112 accttcatgtagacatcaatatctgggtc 140  Q
    |||||||||||||||||||||||||||||    
T  44226188 accttcatgtagacatcaatatctgggtc 44226216  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 39334475 - 39334417
Alignment:
Q  112 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttct 170  Q
    ||||||||||| |||||||||||||| || ||  |||| ||||| ||||||||||||||    
T  39334475 accttcatgtacacatcaatatctggatcaggcttgatatttgcatctttttctcttct 39334417  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 39568129 - 39568187
Alignment:
Q  112 accttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttct 170  Q
    ||||||||||| |||||||||||||| || ||  |||| ||||| ||||||||||||||    
T  39568129 accttcatgtacacatcaatatctggatcaggcttgatatttgcatctttttctcttct 39568187  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 2164586 - 2164650
Alignment:
Q  106 tttctcaccttcatgtagacatcaatatctgggtctggtatgatctttgcttctttttctcttct 170  Q
    |||||||||||||| ||| |||||| ||| || |||||| | ||||||||||| || ||||||||    
T  2164586 tttctcaccttcatataggcatcaacatcaggatctggtttaatctttgcttccttctctcttct 2164650  T

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