View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0526_low_66 (Length: 267)
Name: NF0526_low_66
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_66 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 1997129 - 1997315
Alignment:
| Q |
24 |
gcagcacagatctggtccgatctaaaagatcgattttctcaatcacatgctcctaaaatatatcaattaaaacaatcaatttctgccctcaaacaagaag |
123 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1997129 |
gcagaacagatctggtccgatctacaagatcgattttctcaatcaaatgctcctaaaatatatcaattaaaacaatcaatttctgccctcaaacaagaag |
1997228 |
T |
|
| Q |
124 |
gcatgtatgtttctctttatttcactcaactcaaatctctttgagatgaactcaactctattgctcttgtcaatccttgtatctgtg |
210 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1997229 |
gcatgtatgtttctctttatttcacccaactcaaatctctttgggatgaactcaactctattgctcttgtcaatccttgtatctgtg |
1997315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 35252786 - 35252600
Alignment:
| Q |
24 |
gcagcacagatctggtccgatctaaaagatcgattttctcaatcacatgctcctaaaatatatcaattaaaacaatcaatttctgccctcaaacaagaag |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35252786 |
gcagcacagatctggtccgatctaaaagatcgattttctcaatcaaatgctcctaaaatatatcaattaaaacaatcaatttctaccctcaaacaagaag |
35252687 |
T |
|
| Q |
124 |
gcatgtatgtttctctttatttcactcaactcaaatctctttgagatgaactcaactctattgctcttgtcaatccttgtatctgtg |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35252686 |
gcatgtctgtttctctttatttcactcaactcaaatctctttgggatgaactcaactctattgctcttgtcaatccttgtatatgtg |
35252600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 23775463 - 23775554
Alignment:
| Q |
88 |
aattaaaacaatcaatttctgccc-tcaaacaagaaggcatgtatgtttctctttatttcactcaactcaaatctctttgagatgaactcaa |
178 |
Q |
| |
|
|||| ||||||||||| ||||||| | ||||| ||| ||||| |||||||||||| |||||| ||||||| ||||| | ||||||||||| |
|
|
| T |
23775463 |
aattgaaacaatcaatctctgcccctgaaacatgaacccatgtttgtttctctttacttcacttaactcaattctctattggatgaactcaa |
23775554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 987894 - 987708
Alignment:
| Q |
24 |
gcagcacagatctggtccgatctaaaagatcgattttctcaatcacatgctcctaaaatatatcaattaaaacaatcaatttctgccctcaaacaagaag |
123 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
987894 |
gcagaacagatctggtccgatctacaagatcgattttctcaatcaaatgctcctaaaatatatcaattaaaacaatcaatttctgccctcaaacaagaag |
987795 |
T |
|
| Q |
124 |
gcatgtatgtttctctttatttcactcaactcaaatctctttgagatgaactcaactctattgctcttgtcaatccttgtatctgtg |
210 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
987794 |
gcatgtatgtttctctttatttcacccaactcaaatctctttgggatgaactcaactctattgctcttgtcaatccttgtatctgtg |
987708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 23919874 - 23919969
Alignment:
| Q |
24 |
gcagcacagatctggtccgatctaaaagatcgattttctcaatcacatgctcctaaaatatatcaattaaaacaatcaatttctgccctcaaacaa |
119 |
Q |
| |
|
|||||| | ||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
23919874 |
gcagcataaatctggttcgatctaaaagatcgattttgtcaagcaaatgctcctaaaatatatcaattaaaacaatcgatttatgccctcaaacaa |
23919969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1085 times since January 2019
Visitors: 3663