View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_69 (Length: 265)
Name: NF0526_low_69
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 30181970 - 30182159
Alignment:
| Q |
30 |
cttcaatctttccacaacaatgtatgtataattctttaagattttgtaaacttctagctgttgatggtttcataatactttccaatccagcacaattgcc |
129 |
Q |
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| T |
30181970 |
cttcaatctttccacaacaatgtatgtataattctttaagattttgtaaacttctagctgttgatggtttcataatactttccaatccagcacaatggcc |
30182069 |
T |
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| Q |
130 |
cacctccaacttctgtaaattctcaaacagaactgacgatggaaatatattctcaagtctagagcatgaatttactaccaatctttcaat |
219 |
Q |
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| T |
30182070 |
cacctccaacttctgtaaattctcaaacataactgacgatggaaatatattctttagtctagagcatgaatttactaccaatctttcaat |
30182159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 219
Target Start/End: Complemental strand, 30281872 - 30281683
Alignment:
| Q |
30 |
cttcaatctttccacaacaatgtatgtataattctttaagattttgtaaacttctagctgttgatggtttcataatactttccaatccagcacaattgcc |
129 |
Q |
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| T |
30281872 |
cttcaatctttccacaacaatgtatgtataattctttaagattttgtaaacttctagctgttgatggtttcataatactttccaatccagcacaatggcc |
30281773 |
T |
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| Q |
130 |
cacctccaacttctgtaaattctcaaacagaactgacgatggaaatatattctcaagtctagagcatgaatttactaccaatctttcaat |
219 |
Q |
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| T |
30281772 |
caccaccaatttctgtaaattctcaaatagaaatgacgacggaaatatattctttagtctagagcatgaatttactaccaatctttcaat |
30281683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 30792891 - 30792723
Alignment:
| Q |
57 |
ataattctttaagattttgtaaacttctagctgttgatggtttcataatactttccaatccagcacaattgcccacctccaacttctgtaaattctcaaa |
156 |
Q |
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| T |
30792891 |
ataattttctaagtttttgtaaacttgtagctgttgacgatttcataatattttccaatccagcacaatcacccacctccaattgctctaaattctcaaa |
30792792 |
T |
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| Q |
157 |
cagaactgacgatggaaatatattctcaagtctagagcatgaatttactaccaatctttcaatcttttg |
225 |
Q |
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||| | | |||||||||||||||| |||||||||||| || |||| ||||| ||||||| ||||| |
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| T |
30792791 |
cagcattccggatggaaatatattctttagtctagagcatatatatacttccaatatttcaatgttttg |
30792723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 30254254 - 30254148
Alignment:
| Q |
74 |
tgtaaacttctagctgttgatggtttcataatactttccaatccagcacaattgcccacctccaacttctgtaaattctcaaacagaactgacgatggaa |
173 |
Q |
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| T |
30254254 |
tgtaaactgatagctgttgatgatttcacaatattttccaaaccagcacaattgcctacctccaactgttgtaaattctcaaacagcaccgaggatggaa |
30254155 |
T |
|
| Q |
174 |
atatatt |
180 |
Q |
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|||||| |
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| T |
30254154 |
ctatatt |
30254148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 30070359 - 30070238
Alignment:
| Q |
71 |
ttttgtaaacttctagctgttgatggtttcataatactttccaatccagcacaattgcccacctccaacttctgtaaattctcaaacagaactgacgatg |
170 |
Q |
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||||||||||| ||||||||||| ||||| |||| |||||||||||| ||||| || ||||| ||| | || ||||||||||||||| ||||| |||| |
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| T |
30070359 |
ttttgtaaactggcagctgttgatgatttcacaataatttccaatccagtacaatcgctcacctgcaagtgctctaaattctcaaacagcactgaggatg |
30070260 |
T |
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| Q |
171 |
gaaatatattctcaagtctaga |
192 |
Q |
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||| |||||||| |||||||| |
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| T |
30070259 |
gaactatattcttgagtctaga |
30070238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 30182212 - 30182256
Alignment:
| Q |
221 |
ttttgtaacataatgagttctaaacttcccaacttcataattgtt |
265 |
Q |
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| T |
30182212 |
ttttgtaacataatgagttctaaacttcccaacttcataattgtt |
30182256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 30177104 - 30177005
Alignment:
| Q |
97 |
tttcataatactttccaatccagcacaattgcccacctccaacttctgtaaattctcaaacagaactgacgatggaaatatattctcaagtctagagcat |
196 |
Q |
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| T |
30177104 |
tttcataatattttccaatccagcgcaatagcgtacctccaaatgctctaaattcccaaacaggactgacgatggaactatacttttcagtctagagcat |
30177005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 30281630 - 30281586
Alignment:
| Q |
221 |
ttttgtaacataatgagttctaaacttcccaacttcataattgtt |
265 |
Q |
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| T |
30281630 |
ttttgtaacttaatgagttctaaactttccaacttcataattgtt |
30281586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 30236906 - 30236976
Alignment:
| Q |
88 |
tgttgatggtttcataatactttccaatccagcacaattgcccacctccaacttctgtaaattctcaaaca |
158 |
Q |
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|||||||| |||||||||| |||||||||| ||||||| |||| ||||||| || |||||||||||||| |
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| T |
30236906 |
tgttgatgatttcataatatattccaatccaccacaatttaccacttccaactgctctaaattctcaaaca |
30236976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 30035475 - 30035543
Alignment:
| Q |
88 |
tgttgatggtttcataatactttccaatccagcacaattgcccacctccaacttctgtaaattctcaaa |
156 |
Q |
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|||||||| |||||||||| ||||| |||| ||||||| |||| ||||||| || |||||||||||| |
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| T |
30035475 |
tgttgatgatttcataatatattccagtccaccacaatttaccacttccaactgctctaaattctcaaa |
30035543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 30229613 - 30229681
Alignment:
| Q |
88 |
tgttgatggtttcataatactttccaatccagcacaattgcccacctccaacttctgtaaattctcaaa |
156 |
Q |
| |
|
|||||||| |||||||||| ||||| |||| ||||||| |||| ||||||| || |||||||||||| |
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| T |
30229613 |
tgttgatgatttcataatatattccagtccaccacaatttaccacttccaactgctctaaattctcaaa |
30229681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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