View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_7 (Length: 584)

Name: NF0526_low_7
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_7
NF0526_low_7
[»] chr4 (10 HSPs)
chr4 (18-553)||(38061345-38061880)
chr4 (25-553)||(38058574-38059102)
chr4 (28-553)||(38072902-38073433)
chr4 (60-553)||(38086412-38086911)
chr4 (25-553)||(38081987-38082518)
chr4 (193-298)||(37954488-37954593)
chr4 (221-345)||(38077978-38078103)
chr4 (468-553)||(37954236-37954321)
chr4 (517-553)||(38125642-38125678)
chr4 (517-553)||(38129595-38129631)
[»] chr6 (3 HSPs)
chr6 (422-551)||(7001405-7001534)
chr6 (336-452)||(10792936-10793055)
chr6 (519-551)||(10792892-10792924)
[»] chr1 (2 HSPs)
chr1 (336-452)||(34268580-34268699)
chr1 (519-551)||(34268711-34268743)
[»] chr2 (1 HSPs)
chr2 (459-553)||(11803511-11803605)


Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Original strand, 38061345 - 38061880
Alignment:
18 tgaatccttggcaccatcttcacgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaagtcagactttactttgaaaata 117  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
38061345 tgaatctttggcaccatcttcatgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaaatcagactttactttgaaaata 38061444  T
118 tcctttgcagcttgtatgctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatac 217  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38061445 tcctttgcagcttgtgttctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatac 38061544  T
218 aatcttctctaaccaaaccaagtgctggaaacttttctaccatcaagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgtac 317  Q
    ||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38061545 aatcttctctaaccaaaccaagttctggaaacttttctttcatcaagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgtac 38061644  T
318 tgttgaatttgactttccttttttacttaaatttaccctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttg 417  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38061645 tgttgaatttgacttaccttttttacttaaatttaccctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttg 38061744  T
418 tgaacaagctttgttgcattttgatccaatgtttttggcacattgaacactgtcacacttgatggaacttgaacaagtttaaccttccatgaaattatga 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
38061745 tgaacaagctttgttgcattttgatccaatgtttttggcacattgaacactgacacacttgatggaacttgaacaagtttaaccttccatgaaattatga 38061844  T
518 ctccaaaacttgctcctccacctcctctaatagccc 553  Q
    ||||||||||||||||||||||||||||||||||||    
38061845 ctccaaaacttgctcctccacctcctctaatagccc 38061880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 25 - 553
Target Start/End: Complemental strand, 38059102 - 38058574
Alignment:
25 ttggcaccatcttcacgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaagtcagactttactttgaaaatatcctttg 124  Q
    ||||||||||||||| |||||||| |||| |||| ||||||||||| ||||| |||||||||| | ||||| ||||| ||||||||| ||||||||||||    
38059102 ttggcaccatcttcatgaaacataggccatattccttctaatccaacttcaggaatgggaattttgacaaaatcagattttactttgtaaatatcctttg 38059003  T
125 cagcttgtatgctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatacaatcttc 224  Q
    ||||  || | |||||||||||| ||||| ||| |||| |||||||||| || |||||||||||||| ||||||| |||||||||||||| |||||||||    
38059002 cagcaagtgttctgttgagcaacgtttcaagtggttcgtctttcggaaacccgtaaaggtaaagaactgattcaacccaactcatctcaacacaatcttc 38058903  T
225 tctaaccaaaccaagtgctggaaacttttctaccatcaagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgtactgttgaa 324  Q
    |||||||||||||||  | |||||||| |||  ||||||| | ||||| |||||||| | ||||||||||||||||||||||| |||||||||||||||     
38058902 tctaaccaaaccaagctcaggaaacttctcttgcatcaagtgtatgagcttatctactcctccaagaaacaaggcttgaaatatagcttgtactgttgat 38058803  T
325 tttgactttccttttttacttaaatttaccctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaa 424  Q
    |||||||| || ||| ||||| ||||||||||||| |||||||||  |||  ||| ||||||||||||| ||||||||| ||||||||||||||||| ||    
38058802 tttgacttcccctttatacttgaatttaccctttgtaagataacagtaatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataa 38058703  T
425 gctttgttgcattttgatccaatgtttttggcacattgaacactgtcacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaa 524  Q
    ||||||||||||| || |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
38058702 gctttgttgcattgtgttccaatgtttttggaacattgaagactgtcacaattgatggaacttgaacaagtttaatcttccatgaaattatgactccaaa 38058603  T
525 acttgctcctccacctcctctaatagccc 553  Q
    ||||||||||||||| |||||||||||||    
38058602 acttgctcctccaccacctctaatagccc 38058574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 28 - 553
Target Start/End: Complemental strand, 38073433 - 38072902
Alignment:
28 gcaccatcttcacgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaagtcagactttactttgaaaatatcctttgcag 127  Q
    ||||||||||||  ||||| | |||| | || |||||| ||| |||||| ||| |||||| | ||||| ||||| ||  ||||| || ||||||||||||    
38073433 gcaccatcttcatcaaacaaaggccataatccttctaaaccagtttcaggaataggaattttgacaaaatcagatttcgctttggaattatcctttgcag 38073334  T
128 cttgtatgctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatacaatcttctct 227  Q
    || || | |||||||||||| ||||| ||| ||||||||  ||||| | | ||||||||||||| ||||||||||||||||| |||| ||||||||||||    
38073333 ctagtgttctgttgagcaacgtttcaagtggttcgccttctggaaaccgaaaaaggtaaagaactgattcaatccaactcatttcaacacaatcttctct 38073234  T
228 aaccaaaccaagtgctggaaacttttctaccatcaagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgtactgttgaattt 327  Q
    ||||||||||||| | |||||||||||| |||||||||| | ||| |||||||||||||| |||||||||| ||||||||||||| |||||||||| |||    
38073233 aaccaaaccaagttcaggaaacttttcttccatcaagggtaagaggttatctacacttcctagaaacaaggattgaaataaagctagtactgttgacttt 38073134  T
328 gactttccttttttac------ttaaatttaccctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaa 421  Q
    | ||  |||| |||||      |||||| || |||||||||||||| || |||||||| |||||| |||| | ||   |  |||||||||||||||||||    
38073133 ggctcaccttgtttacttgaatttaaatctagcctttgcaagataatattaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaa 38073034  T
422 caagctttgttgcattttgatccaatgtttttggcacattgaacactgtcacacttgatggaacttgaacaagtttaaccttccatgaaattatgactcc 521  Q
    ||||||||||||||||||| ||||||||| |||| ||| | ||||| || ||| |||||||||||||||||||||||| ||||||||||| |||||| ||    
38073033 caagctttgttgcattttgttccaatgttcttggaacagtaaacaccgttacagttgatggaacttgaacaagtttaatcttccatgaaactatgacacc 38072934  T
522 aaaacttgctcctccacctcctctaatagccc 553  Q
    |||||||||||||||||| |||||||||||||    
38072933 aaaacttgctcctccaccacctctaatagccc 38072902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 60 - 553
Target Start/End: Complemental strand, 38086911 - 38086412
Alignment:
60 ttctaatccaatttcagaaatgggaattctcacaaagtcagactttactttgaaaatatcctttgcagcttgtatgctgttgagcaacatttcaggtgat 159  Q
    |||||||||| |||||| ||| |||||||||||||| ||||| ||| ||||||| |||||   || ||||||| | ||||| ||||||| ||||||||      
38086911 ttctaatccagtttcaggaattggaattctcacaaaatcagattttgctttgaatatatcaagtgtagcttgtgttctgttaagcaacacttcaggtgta 38086812  T
160 tcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaatacaatcttctctaaccaaaccaagtgctggaaacttttctacca 259  Q
       ||||| |||||   | ||| ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||  | |||||||| |||   |    
38086811 gaaccttttggaaactgaaaaaagtaaagaacagattcaatccaactcatttcaatacaatattctctaaccaaaccaagctcaggaaacttctcttgaa 38086712  T
260 tcaagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgtactgttgaatttgactttccttttttactt------aaatttac 353  Q
     |||||| |||||||||||||||| |||||||||||| |||||||||||| || |||| | ||| |||||||  ||||||||||||      ||||||||    
38086711 ccaagggtatgagtttatctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttgaatttaaatttac 38086612  T
354 cctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaagctttgttgcattttgatccaatgttttt 453  Q
    ||||||| ||| || ||  |||||||| |||||||||| | |||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||    
38086611 cctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgttttt 38086512  T
454 ggcacattgaacactgtcacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaaacttgctcctccacctcctctaatagccc 553  Q
    || ||| | |||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| |||||||||||||    
38086511 ggaacagtaaacactgtcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagccc 38086412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 25 - 553
Target Start/End: Complemental strand, 38082518 - 38081987
Alignment:
25 ttggcaccatcttcacgaaacatacgccacattctttctaatccaatttcagaaatgggaattctcacaaagtcagactttactttgaaaata--tcct- 121  Q
    |||||||| |||||| |||||| |  ||| |||| |||||||||| |||||| ||||||| || ||||||| ||||| ||| ||||| |||||  || |     
38082518 ttggcaccttcttcatgaaacaaagaccatattccttctaatccattttcaggaatgggagttttcacaaaatcagattttgctttgtaaataaatcttg 38082419  T
122 ------ttgcagcttgtatgctgttgagcaacatttcaggtgattcgcctttcggaaatccataaaggtaaagaaccgattcaatccaactcatctcaat 215  Q
          |||||||| || | ||||| ||||||| ||||||| || | ||||||||||||  | ||||||||||||||||||||||||||||||| |||||    
38082418 ggctgtttgcagctagtgttctgttaagcaacacttcaggtaatgcacctttcggaaattgaaaaaggtaaagaaccgattcaatccaactcatttcaat 38082319  T
216 acaatcttctctaaccaaaccaagtgctggaaacttttctaccatcaagggaatgagtttatctacacttccaagaaacaaggcttgaaataaagcttgt 315  Q
    ||||| |||||| |||| ||| |   | ||||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |     
38082318 acaattttctctgaccacacccaactcaggaaacttttgatccatcaagggaatgagtttatctacacctccaagaaacaaggcttgaaatatagctaga 38082219  T
316 actgttgaatttgactttccttttttacttaaatttaccctttgcaagataacataaatggctatgttttcatcaattgtacttgtcacaaactgccact 415  Q
    | |||||       ||  |||||||||||| |||||| |||||| |||| || ||  ||||||||||||||||||||| |||||| || | |||||||||    
38082218 attgttgt------ctcgccttttttacttgaatttatcctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccact 38082125  T
416 tgtgaacaagctttgttgcattttgatccaatgtttttggcacattgaacactgtcacacttgatggaacttgaacaagtttaaccttccatgaaattat 515  Q
    ||||||||||||||||||||||||| ||||||| | |||| ||  | ||||| |||||  ||| |||||||| ||||||||| | |||||||||||||||    
38082124 tgtgaacaagctttgttgcattttgttccaatgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattat 38082025  T
516 gactccaaaacttgctcctccacctcctctaatagccc 553  Q
    |||||||||||||||||||||||| |||||||||||||    
38082024 gactccaaaacttgctcctccaccacctctaatagccc 38081987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 37954593 - 37954488
Alignment:
193 gattcaatccaactcatctcaatacaatcttctctaaccaaaccaagtgctggaaacttttctaccatcaagggaatgagtttatctacacttccaagaa 292  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||  ||| |||||||||| || |||  |||||||| ||||||||    
37954593 gattcaatccaactcatctcagtacaatcttctctaaccaaaccaagctctggaaactcctcttccatcaaggggataagtccatctacacctccaagaa 37954494  T
293 acaagg 298  Q
    ||||||    
37954493 acaagg 37954488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 221 - 345
Target Start/End: Complemental strand, 38078103 - 38077978
Alignment:
221 cttctctaaccaaaccaagtgctggaaacttttctaccatcaagggaatgagtttatctacacttccaagaaa-caaggcttgaaataaagcttgtactg 319  Q
    |||||||||||||||||||  | |||||||| |||  ||||||||| ||||||| |||||||| ||||| ||| |||||||| |||||||||| ||||||    
38078103 cttctctaaccaaaccaagctcaggaaacttctcttgcatcaagggcatgagttcatctacacctccaaaaaaacaaggcttaaaataaagctagtactg 38078004  T
320 ttgaatttgactttccttttttactt 345  Q
    |||| |||||||  ||||||||||||    
38078003 ttgactttgactcaccttttttactt 38077978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 468 - 553
Target Start/End: Complemental strand, 37954321 - 37954236
Alignment:
468 tgtcacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaaacttgctcctccacctcctctaatagccc 553  Q
    ||||||| |||||||||| ||||| ||||| ||||||||||  || || |||||||| ||||||||||||||||||||||||||||    
37954321 tgtcacagttgatggaacatgaactagttttaccttccatgctatgataactccaaagcttgctcctccacctcctctaatagccc 37954236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 553
Target Start/End: Complemental strand, 38125678 - 38125642
Alignment:
517 actccaaaacttgctcctccacctcctctaatagccc 553  Q
    |||||||||||||||||||||||||||||||||||||    
38125678 actccaaaacttgctcctccacctcctctaatagccc 38125642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 553
Target Start/End: Complemental strand, 38129631 - 38129595
Alignment:
517 actccaaaacttgctcctccacctcctctaatagccc 553  Q
    |||||||||||||||||||||||||||||||||||||    
38129631 actccaaaacttgctcctccacctcctctaatagccc 38129595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 422 - 551
Target Start/End: Original strand, 7001405 - 7001534
Alignment:
422 caagctttgttgcattttgatccaatgtttttggcacattgaacactgtcacacttgatggaacttgaacaagtttaaccttccatgaaattatgactcc 521  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||| || |||||||| |||||||||||||||||||||    
7001405 caagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcatactttatggaactttaataagtttaatcttccatgaaattatgactcc 7001504  T
522 aaaacttgctcctccacctcctctaatagc 551  Q
    |||||||||||||||| | |||||||||||    
7001505 aaaacttgctcctccagcacctctaatagc 7001534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 336 - 452
Target Start/End: Complemental strand, 10793055 - 10792936
Alignment:
336 ttttttacttaaatttaccctttgcaagataacataa---atggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaagctttgtt 432  Q
    |||||||||| ||||||||||| ||||||||||||||   |||||||||||| |||||||| |||||||||||| |||||| ||||||||||| ||||||    
10793055 ttttttacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgtt 10792956  T
433 gcattttgatccaatgtttt 452  Q
    ||||||||||||||||||||    
10792955 gcattttgatccaatgtttt 10792936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 519 - 551
Target Start/End: Complemental strand, 10792924 - 10792892
Alignment:
519 tccaaaacttgctcctccacctcctctaatagc 551  Q
    |||||||||||||||||||||||||||||||||    
10792924 tccaaaacttgctcctccacctcctctaatagc 10792892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 336 - 452
Target Start/End: Original strand, 34268580 - 34268699
Alignment:
336 ttttttacttaaatttaccctttgcaagataacataa---atggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaagctttgtt 432  Q
    |||||||||| ||||||||||| ||||||||||||||   |||||||||||| |||||||| |||||||||||| |||||| ||||||||||| ||||||    
34268580 ttttttacttgaatttacccttagcaagataacataattaatggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgtt 34268679  T
433 gcattttgatccaatgtttt 452  Q
    ||||||||||||||||||||    
34268680 gcattttgatccaatgtttt 34268699  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 519 - 551
Target Start/End: Original strand, 34268711 - 34268743
Alignment:
519 tccaaaacttgctcctccacctcctctaatagc 551  Q
    |||||||||||||||||||||||||||||||||    
34268711 tccaaaacttgctcctccacctcctctaatagc 34268743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 553
Target Start/End: Original strand, 11803511 - 11803605
Alignment:
459 attgaacactgtcacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaaacttgctcctccacctcctctaatagccc 553  Q
    |||||| ||||||||  |||| |||||||| ||||| || || ||||||| | | || |||||||| ||||  |||||||||||||| |||||||    
11803511 attgaaaactgtcactattgaaggaacttgtacaagcttgactttccatgcagtaatcactccaaagcttgaccctccacctcctcttatagccc 11803605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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