View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_70 (Length: 264)

Name: NF0526_low_70
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_70
NF0526_low_70
[»] chr6 (6 HSPs)
chr6 (1-240)||(33467163-33467402)
chr6 (1-204)||(34604444-34604634)
chr6 (1-204)||(34725721-34725911)
chr6 (109-223)||(20430339-20430453)
chr6 (176-223)||(34728136-34728183)
chr6 (1-223)||(6079786-6080012)
[»] chr1 (1 HSPs)
chr1 (1-223)||(49350131-49350357)
[»] chr4 (2 HSPs)
chr4 (176-223)||(27453003-27453050)
chr4 (121-223)||(14145286-14145388)
[»] chr8 (1 HSPs)
chr8 (1-223)||(15217941-15218167)
[»] chr2 (2 HSPs)
chr2 (80-223)||(45329396-45329539)
chr2 (1-33)||(8178324-8178356)
[»] chr3 (1 HSPs)
chr3 (6-145)||(47695036-47695179)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33467402 - 33467163
Alignment:
Q  1 ccaaagcttaaatcatgaaccatctaattctttttccttttcaccaaactatttagtttcttatatgcacaaaaataattccttctagtcatattgtcca 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33467402 ccaaagcttaaatcatgaacaatctaattctttttccttttcaccaaaccatttagtttcttatatgcacaaaaataattccttctagtcatattgtcca 33467303  T
Q  101 ctattttgatagactttcccgtaagggtgcctatattccatgttcaaaaatcaatcctactttcacgaaccgacgtctttacccacacccattcatgaag 200  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33467302 ctattttcatagactttcccgtaagggtgcctatattccatgttcaaaaatcaatcatactttcacgaaccgacgtctttacccacacccattcatgaag 33467203  T
Q  201 atgtggaaacccttacttattttcactgcatcccgttcat 240  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  33467202 atgtggaaacccttacttattttcagtgcatcccgttcat 33467163  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 34604444 - 34604634
Alignment:
Q  1 ccaaagcttaaatcatgaaccatctaattctttttccttttcaccaaactatttagtttcttatatgcacaaaaataa--ttccttctagtc----atat 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||    ||||    
T  34604444 ccaaagcttaaatcatgaactatctaattctttttccttttcacccaaccatttagtttcttatatgcacaaaaataatcttccttctagtcatatatat 34604543  T
Q  95 tgtccactattttgatagactttcccgtaagggtgcctatattccatgttcaaaaatcaatcctactttcacgaaccgacgtctttacccacacccattc 194  Q
    ||||||||||||| ||||            ||        ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  34604544 tgtccactattttcatag------------gg-------aattccatgtccaaaaatcaatcctactttcacgaacccatgtctttacccacacccattc 34604624  T

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Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 34725721 - 34725911
Alignment:
Q  1 ccaaagcttaaatcatgaaccatctaattctttttccttttcaccaaactatttagtttcttatatgcacaaaaataa--ttccttctagtc----atat 94  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  ||||||||||||    ||||    
T  34725721 ccaaagcttaaatcatgaactatctaattctttttccttttcacccaaccatttagtttcttatatgcacaaaaataatcttccttctagtcatatatat 34725820  T
Q  95 tgtccactattttgatagactttcccgtaagggtgcctatattccatgttcaaaaatcaatcctactttcacgaaccgacgtctttacccacacccattc 194  Q
    ||||||||||||| ||||            ||        ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  34725821 tgtccactattttcatag------------gg-------aattccatgtccaaaaatcaatcctactttcacgaacccatgtctttacccacacccattc 34725901  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 223
Target Start/End: Original strand, 20430339 - 20430453
Alignment:
Q  109 atagactttcccgtaagggtgcctatattccatgttcaaaaatcaatcctactttcacgaaccgacgtctttacccacacccattcatgaagatgtggaa 208  Q
    ||||| || |||||||| || |||||||||||||||| ||||  ||||||||| ||| ||||   | ||||||||| ||||| |||| |||||||||| |    
T  20430339 atagatttgcccgtaagagtacctatattccatgttccaaaacgaatcctactctcatgaactagcttctttacccgcacccgttcacgaagatgtggga 20430438  T
Q  209 acccttacttatttt 223  Q
    |||||||||||||||    
T  20430439 acccttacttatttt 20430453  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 34728136 - 34728183
Alignment:
Q  176 tctttacccacacccattcatgaagatgtggaaacccttacttatttt 223  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||    
T  34728136 tctttacccacacccattcatgaagatgcggaaacccttgcttatttt 34728183  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6080012 - 6079786
Alignment:
Q  1 ccaaagcttaaatcatgaaccatctaattctttttccttttcaccaaactatttagtttcttatatgcaca--aaaataat--tccttctagtcatattg 96  Q
    |||||||||||||| ||||| ||||||||||||  ||||||  || | | | |||||||||| || |||||  ||| | ||  |||| ||||||||  ||    
T  6080012 ccaaagcttaaatcctgaactatctaattctttcgccttttttcccacccacttagtttcttgtaggcacatgaaattgatcctcctcctagtcattgtg 6079913  T
Q  97 tccactattttgatagactttcccgtaagggtgcctatattccatgttcaaaaatcaatcctactttcacgaaccgacgtctttacccacacccattcat 196  Q
    ||  ||| ||  ||||| ||||| ||||| || ||||||||||| |||| ||||  ||||||| | ||| ||||   | ||||||||| ||||| ||||     
T  6079912 tcttctacttccatagattttcctgtaagtgtacctatattccaggttccaaaacgaatcctattctcatgaactagcttctttacccgcacccgttcac 6079813  T
Q  197 gaagatgtggaaacccttacttatttt 223  Q
    ||||||| || ||||||| ||||||||    
T  6079812 gaagatgcgggaacccttgcttatttt 6079786  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49350131 - 49350357
Alignment:
Q  1 ccaaagcttaaatcatgaaccatctaattctttttccttttcaccaaactatttagtttcttatatgcaca--aaaataat--tccttctagtcatattg 96  Q
    |||||||||||||| ||||| ||||||||||||  ||||||  || | | | |||||||||| || |||||  ||| | ||  |||| ||||||||  ||    
T  49350131 ccaaagcttaaatcctgaactatctaattctttcgcctttttccccacccacttagtttcttgtaggcacatgaaattgatcctcctcctagtcattgtg 49350230  T
Q  97 tccactattttgatagactttcccgtaagggtgcctatattccatgttcaaaaatcaatcctactttcacgaaccgacgtctttacccacacccattcat 196  Q
    || |||| ||  ||||| ||||| ||||| || ||||||||||| |||| ||||  ||||||| | ||| ||||   | ||||||||| ||| | |||||    
T  49350231 tctactacttccatagattttcctgtaagtgtacctatattccaagttccaaaacgaatcctattctcatgaactagcttctttacccgcactcgttcat 49350330  T
Q  197 gaagatgtggaaacccttacttatttt 223  Q
    ||||||| || ||||||| ||||||||    
T  49350331 gaagatgcgggaacccttgcttatttt 49350357  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 27453003 - 27453050
Alignment:
Q  176 tctttacccacacccattcatgaagatgtggaaacccttacttatttt 223  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||||    
T  27453003 tctttacccacacccgttcacgaagatgtggaaacccttgcttatttt 27453050  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 14145388 - 14145286
Alignment:
Q  121 gtaagggtgcctatattccatgttcaaaaatcaatcctactttcacgaaccgacgtctttacccacacccattcatgaagatgtggaaacccttacttat 220  Q
    |||||||||||| |||||||||||| ||||   ||| |||| |||  |||  || ||||||||||||| | ||||  |||||||||| |||||| |||||    
T  14145388 gtaagggtgcctttattccatgttctaaaacagatcatactctcattaactaacttctttacccacactcgttcacaaagatgtggagacccttgcttat 14145289  T
Q  221 ttt 223  Q
    |||    
T  14145288 ttt 14145286  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15217941 - 15218167
Alignment:
Q  1 ccaaagcttaaatcatgaaccatctaattctttttccttttcaccaaactatttagtttcttatatgcacaaaaa--taat--tccttctagtcatattg 96  Q
    |||||||||||||| ||||| ||||||||||||  ||||||  || | | | |||||||||| ||  |||| |||  || |  |||| || |||||| ||    
T  15217941 ccaaagcttaaatcctgaactatctaattctttcacctttttccccacccacttagtttcttgtagacacataaaattagtcctcctccttgtcatagtg 15218040  T
Q  97 tccactattttgatagactttcccgtaagggtgcctatattccatgttcaaaaatcaatcctactttcacgaaccgacgtctttacccacacccattcat 196  Q
    || |||| ||  ||||| || | |||||| || ||||||||||| |||| ||||  ||||||||| ||| ||||   | ||||||||| ||||  ||||     
T  15218041 tctactacttccatagatttacacgtaagagtacctatattccaagttccaaaacgaatcctactctcatgaactagcttctttacccgcacctgttcac 15218140  T
Q  197 gaagatgtggaaacccttacttatttt 223  Q
    |||||||||| ||||||| ||||||||    
T  15218141 gaagatgtgggaacccttgcttatttt 15218167  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 45329396 - 45329539
Alignment:
Q  80 tccttctagtcatattgtccactattttgatagactttcccgtaagggtgcctatattccatgttcaaaaatcaatcctactttcacgaaccgacgtctt 179  Q
    |||| ||| ||||| |||| |||||||  ||||| || |||||||| || ||||||||||| |||| ||||  ||||||||| | | ||||   | ||||    
T  45329396 tcctcctaatcatagtgtctactatttctatagatttacccgtaagagtacctatattccaagttccaaaacgaatcctactctaatgaactagcttctt 45329495  T
Q  180 tacccacacccattcatgaagatgtggaaacccttacttatttt 223  Q
    ||||| ||||| || | | |||||||| ||||||| ||||||||    
T  45329496 tacccgcacccgtttacgtagatgtgggaacccttgcttatttt 45329539  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8178356 - 8178324
Alignment:
Q  1 ccaaagcttaaatcatgaaccatctaattcttt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  8178356 ccaaagcttaaatcatgaactatctaattcttt 8178324  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 47695036 - 47695179
Alignment:
Q  6 gcttaaatcatgaaccatctaattctttttccttttcaccaaactatttagtttcttatatgcac--aaaaataa--ttccttctagtcatattgtccac 101  Q
    ||||||||| || ||||| ||||||||||||||||||||| | | | |||||||||| || ||||  |||| |||  ||| | ||||||||| |||| ||    
T  47695036 gcttaaatcttggaccatgtaattctttttccttttcacccatccaattagtttcttttaggcacttaaaattaacgttcttcctagtcatagtgtcaac 47695135  T
Q  102 tattttgatagactttcccgtaagggtgcctatattccatgttc 145  Q
    |||||  ||| | ||||  ||||  || ||||||||||||||||    
T  47695136 tatttccatatattttcatgtaaacgttcctatattccatgttc 47695179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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