View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_71 (Length: 261)
Name: NF0526_low_71
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 25328065 - 25327834
Alignment:
| Q |
1 |
agctaactgctcaaggggaaattcctcaactgagccatatttggcagctcatcatatgttgttagcacatgcttcagctgcaagattgtataggaagaaa |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25328065 |
agctaactgctcaaggggaaattcctcagctgagccatatttggtagctcatcatatgttgttagcacatgcttcagctgcaagattgtataggaagaaa |
25327966 |
T |
|
| Q |
101 |
tataaggtagaagttatgtagaacatgcaccactttacttacaatctatttctgtttcattttgaatatagttcttaatcataatttgataaatatgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25327965 |
tataaggtagaagttatgtagaacatgcaccactttacttacaatctatttctgtttcattttgaatatagttcttaatcataatttgattaatatgttc |
25327866 |
T |
|
| Q |
201 |
atgaagcaatctttctaaagtgcagggcatgc |
232 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
25327865 |
atgaagaaatctttctaaagtgcagggcatgc |
25327834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 25322202 - 25322094
Alignment:
| Q |
1 |
agctaactgctcaaggggaaattcctcaactgagccatatttggcagctcatcatatgttgttagcacatgcttcagctgcaagattgtataggaagaaa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
25322202 |
agctaaatgctcaaggggaaattcctcaactgagccatatttggtagctcatcatatgttgttagcacatgcttcatctgcaagattgtataggaaaaaa |
25322103 |
T |
|
| Q |
101 |
tataaggta |
109 |
Q |
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||||||||| |
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| T |
25322102 |
tataaggta |
25322094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 9989115 - 9989206
Alignment:
| Q |
53 |
catatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgtagaacatgcaccactttacttacaat |
145 |
Q |
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|||||||| |||||||||||||||||||||| ||||||| ||| |||||||||||| || |||||||||| ||||||||||| ||||||||| |
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| T |
9989115 |
catatgttattagcacatgcttcagctgcaacgttgtataagaaaaaatataaggta-aatttatgtagaaaatgcaccacttcacttacaat |
9989206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 5219199 - 5219094
Alignment:
| Q |
4 |
taactgctcaaggggaaattcctcaactgagccatatttggcagctcatcatatgttgttagcacatgcttcagctgcaagattgtataggaagaaatat |
103 |
Q |
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||||||||| | |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||| ||||| | ||| |
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| T |
5219199 |
taactgctccaaaggaaattcttcaactgagccatatttggttactcatcatatgttgttagcacatgcatcagctacaagactgtacaggaaaatgtat |
5219100 |
T |
|
| Q |
104 |
aaggta |
109 |
Q |
| |
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|||||| |
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| T |
5219099 |
aaggta |
5219094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 14332148 - 14332239
Alignment:
| Q |
53 |
catatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgtagaacatgcaccactttacttacaat |
145 |
Q |
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|||||||| ||||||||||||| |||||||| ||||||| ||| |||||||||||| || |||||||||| ||||||||||| ||||||||| |
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| T |
14332148 |
catatgttattagcacatgcttgagctgcaatgttgtataagaaaaaatataaggta-aatttatgtagaaaatgcaccacttcacttacaat |
14332239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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