View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0526_low_8 (Length: 580)

Name: NF0526_low_8
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0526_low_8
NF0526_low_8
[»] chr1 (22 HSPs)
chr1 (30-571)||(45585655-45586197)
chr1 (150-258)||(8529844-8529952)
chr1 (150-258)||(32951409-32951517)
chr1 (153-257)||(30010378-30010482)
chr1 (153-212)||(50744375-50744434)
chr1 (150-258)||(51597713-51597821)
chr1 (150-212)||(40095024-40095086)
chr1 (150-258)||(10391917-10392025)
chr1 (112-212)||(36285627-36285727)
chr1 (150-209)||(41498498-41498557)
chr1 (113-212)||(49946642-49946741)
chr1 (155-212)||(41676370-41676427)
chr1 (150-258)||(2859023-2859131)
chr1 (150-258)||(35349553-35349661)
chr1 (151-212)||(42230629-42230690)
chr1 (150-202)||(7444596-7444648)
chr1 (165-212)||(44211011-44211058)
chr1 (490-537)||(45584646-45584693)
chr1 (153-197)||(20576225-20576269)
chr1 (165-212)||(42742416-42742463)
chr1 (152-212)||(6563668-6563727)
chr1 (151-244)||(12234069-12234162)
[»] chr8 (29 HSPs)
chr8 (150-258)||(11575497-11575605)
chr8 (150-258)||(7503045-7503153)
chr8 (150-258)||(16652994-16653102)
chr8 (150-212)||(1026940-1027002)
chr8 (150-258)||(31543163-31543271)
chr8 (153-244)||(40990278-40990369)
chr8 (164-258)||(41103611-41103705)
chr8 (113-210)||(31738516-31738613)
chr8 (113-258)||(11785571-11785716)
chr8 (150-258)||(37032424-37032532)
chr8 (166-258)||(42650443-42650535)
chr8 (150-212)||(6315153-6315215)
chr8 (150-204)||(29691013-29691067)
chr8 (150-212)||(30664452-30664514)
chr8 (150-212)||(36308934-36308996)
chr8 (152-212)||(4247610-4247670)
chr8 (150-210)||(29358430-29358490)
chr8 (150-258)||(1281188-1281296)
chr8 (150-258)||(9718570-9718678)
chr8 (150-258)||(11033462-11033570)
chr8 (153-212)||(28083833-28083892)
chr8 (150-258)||(33922565-33922673)
chr8 (155-258)||(7979185-7979288)
chr8 (150-212)||(30479808-30479870)
chr8 (164-211)||(24243152-24243199)
chr8 (165-212)||(30581916-30581963)
chr8 (153-212)||(37923172-37923231)
chr8 (150-244)||(2248511-2248605)
chr8 (113-141)||(35694784-35694812)
[»] chr7 (29 HSPs)
chr7 (113-244)||(24970219-24970350)
chr7 (150-258)||(43230281-43230389)
chr7 (150-259)||(34235098-34235208)
chr7 (150-258)||(33655199-33655307)
chr7 (150-258)||(41497048-41497156)
chr7 (156-212)||(22163206-22163262)
chr7 (156-212)||(22221914-22221970)
chr7 (150-258)||(37417724-37417832)
chr7 (150-258)||(40196623-40196731)
chr7 (150-258)||(13771037-13771145)
chr7 (150-257)||(34228409-34228517)
chr7 (150-212)||(41008274-41008334)
chr7 (150-257)||(1051590-1051696)
chr7 (165-256)||(17852918-17853009)
chr7 (150-212)||(25887283-25887345)
chr7 (115-212)||(13425176-13425273)
chr7 (154-258)||(47390900-47391005)
chr7 (150-212)||(4833622-4833684)
chr7 (150-192)||(18231697-18231739)
chr7 (150-212)||(40572325-40572387)
chr7 (165-212)||(18063667-18063714)
chr7 (165-212)||(19261945-19261992)
chr7 (150-241)||(42087057-42087148)
chr7 (169-258)||(39855975-39856064)
chr7 (150-201)||(10315735-10315786)
chr7 (164-207)||(18127347-18127390)
chr7 (164-211)||(20393693-20393740)
chr7 (116-176)||(32872838-32872898)
chr7 (160-205)||(31571569-31571614)
[»] chr3 (26 HSPs)
chr3 (150-258)||(41110412-41110520)
chr3 (150-212)||(24560308-24560370)
chr3 (150-258)||(41040041-41040149)
chr3 (113-212)||(9312525-9312624)
chr3 (153-244)||(18654694-18654785)
chr3 (156-259)||(46204930-46205033)
chr3 (151-212)||(14898067-14898128)
chr3 (150-207)||(37807176-37807233)
chr3 (150-255)||(21773830-21773935)
chr3 (156-212)||(27542028-27542084)
chr3 (150-258)||(52185060-52185169)
chr3 (150-212)||(36568994-36569056)
chr3 (150-244)||(52473974-52474068)
chr3 (150-258)||(30200179-30200290)
chr3 (150-212)||(16275796-16275858)
chr3 (150-207)||(13082953-13083010)
chr3 (153-244)||(25655064-25655157)
chr3 (152-212)||(2387853-2387913)
chr3 (164-212)||(37237013-37237061)
chr3 (150-257)||(220488-220595)
chr3 (150-212)||(37102240-37102301)
chr3 (162-212)||(51819228-51819278)
chr3 (150-210)||(12790465-12790525)
chr3 (150-212)||(43005830-43005892)
chr3 (160-258)||(28582610-28582708)
chr3 (150-212)||(46556234-46556298)
[»] chr6 (27 HSPs)
chr6 (150-212)||(4097603-4097665)
chr6 (150-258)||(33235996-33236104)
chr6 (150-209)||(1300714-1300773)
chr6 (150-212)||(21606935-21606997)
chr6 (151-241)||(34176397-34176487)
chr6 (150-212)||(30487396-30487458)
chr6 (150-244)||(13583778-13583872)
chr6 (150-243)||(5585393-5585486)
chr6 (153-212)||(14515562-14515621)
chr6 (160-244)||(19278139-19278223)
chr6 (164-211)||(32926737-32926784)
chr6 (150-212)||(1390411-1390472)
chr6 (150-212)||(1395727-1395789)
chr6 (150-208)||(9719122-9719180)
chr6 (113-212)||(10348852-10348951)
chr6 (150-212)||(25741498-25741560)
chr6 (150-212)||(31849201-31849263)
chr6 (155-212)||(665937-665994)
chr6 (155-204)||(10818315-10818364)
chr6 (150-201)||(9721229-9721280)
chr6 (164-211)||(32922437-32922484)
chr6 (150-212)||(2892694-2892756)
chr6 (155-258)||(16738092-16738195)
chr6 (164-201)||(2892948-2892985)
chr6 (152-185)||(2900028-2900061)
chr6 (163-212)||(12811085-12811133)
chr6 (155-244)||(30850008-30850097)
[»] chr4 (26 HSPs)
chr4 (150-212)||(36151667-36151729)
chr4 (150-258)||(54935113-54935222)
chr4 (153-212)||(26167028-26167087)
chr4 (150-212)||(45132592-45132654)
chr4 (150-212)||(45741981-45742043)
chr4 (153-258)||(27735790-27735895)
chr4 (150-258)||(1968450-1968558)
chr4 (153-244)||(5730924-5731015)
chr4 (150-212)||(16400891-16400953)
chr4 (150-212)||(46007792-46007854)
chr4 (150-244)||(35248745-35248839)
chr4 (150-258)||(6891405-6891513)
chr4 (150-258)||(31348412-31348520)
chr4 (160-244)||(37711202-37711286)
chr4 (150-212)||(54320525-54320587)
chr4 (150-211)||(17938198-17938259)
chr4 (157-212)||(2917061-2917116)
chr4 (150-258)||(49735559-49735667)
chr4 (154-208)||(44784087-44784141)
chr4 (150-211)||(34110897-34110958)
chr4 (150-212)||(47433800-47433861)
chr4 (165-208)||(54745011-54745054)
chr4 (150-212)||(41174436-41174498)
chr4 (162-212)||(56135840-56135890)
chr4 (159-208)||(28332899-28332948)
chr4 (175-211)||(23332650-23332686)
[»] chr2 (30 HSPs)
chr2 (153-258)||(36347635-36347740)
chr2 (120-212)||(12541857-12541949)
chr2 (150-212)||(37739982-37740044)
chr2 (150-212)||(39732820-39732882)
chr2 (150-244)||(36566942-36567036)
chr2 (150-258)||(15224785-15224893)
chr2 (150-258)||(23748140-23748248)
chr2 (150-212)||(16565868-16565930)
chr2 (150-212)||(2241501-2241563)
chr2 (150-212)||(17379903-17379965)
chr2 (150-204)||(42316855-42316909)
chr2 (150-211)||(9631652-9631713)
chr2 (150-244)||(19566912-19567006)
chr2 (150-207)||(34209560-34209617)
chr2 (153-258)||(39821714-39821819)
chr2 (165-212)||(31795875-31795922)
chr2 (150-185)||(27926671-27926706)
chr2 (163-212)||(8426975-8427024)
chr2 (164-212)||(18811419-18811467)
chr2 (150-244)||(40022429-40022525)
chr2 (173-212)||(7681339-7681378)
chr2 (150-258)||(28262534-28262642)
chr2 (150-212)||(12751906-12751968)
chr2 (170-212)||(41778864-41778906)
chr2 (164-197)||(35736297-35736330)
chr2 (168-212)||(887007-887051)
chr2 (165-209)||(887210-887254)
chr2 (151-244)||(9427044-9427137)
chr2 (151-212)||(29525823-29525886)
chr2 (150-198)||(36046295-36046343)
[»] chr5 (27 HSPs)
chr5 (150-258)||(13634756-13634864)
chr5 (150-258)||(26414938-26415046)
chr5 (150-257)||(4373657-4373764)
chr5 (150-212)||(10072738-10072800)
chr5 (150-212)||(36392241-36392303)
chr5 (150-212)||(37551498-37551560)
chr5 (150-212)||(37654328-37654390)
chr5 (150-258)||(28279567-28279676)
chr5 (150-258)||(9856925-9857033)
chr5 (150-212)||(37606985-37607047)
chr5 (150-212)||(37779194-37779256)
chr5 (156-244)||(11756936-11757024)
chr5 (150-244)||(7544195-7544289)
chr5 (150-206)||(20146957-20147013)
chr5 (157-212)||(10476119-10476174)
chr5 (153-212)||(16938570-16938629)
chr5 (150-212)||(17024315-17024377)
chr5 (150-212)||(20513536-20513602)
chr5 (150-185)||(22023485-22023520)
chr5 (157-212)||(29002304-29002359)
chr5 (113-212)||(8502889-8502988)
chr5 (150-257)||(9798703-9798810)
chr5 (150-212)||(16501881-16501943)
chr5 (160-244)||(14681528-14681612)
chr5 (113-258)||(36363077-36363222)
chr5 (167-212)||(20409750-20409795)
chr5 (166-210)||(2550459-2550503)
[»] scaffold0262 (1 HSPs)
scaffold0262 (154-258)||(16391-16495)
[»] scaffold0067 (1 HSPs)
scaffold0067 (150-258)||(39278-39389)
[»] scaffold0294 (1 HSPs)
scaffold0294 (157-212)||(15354-15409)
[»] scaffold0171 (1 HSPs)
scaffold0171 (113-258)||(15995-16140)
[»] scaffold0096 (1 HSPs)
scaffold0096 (150-258)||(6629-6736)
[»] scaffold0341 (1 HSPs)
scaffold0341 (152-212)||(18861-18920)
[»] scaffold0006 (1 HSPs)
scaffold0006 (164-212)||(81516-81564)


Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 30 - 571
Target Start/End: Original strand, 45585655 - 45586197
Alignment:
Q  30 tccaacccctcaacaactaatgaaaatataaacgggg-cagaagatggtcgatcaccttgttgaagtcccgtctcttcaaagaatcatttttaaattaca 128  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  45585655 tccaacccctcaacaactaatgaaaatataaacggggtcagaagatggtcaatcaccttgttgaagtcccgtctcttcaaagaatcatttttaaattata 45585754  T
Q  129 gatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttata 228  Q
    |||| ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  45585755 gatactataaaatgtttttttaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttaaaaaaacatgttata 45585854  T
Q  229 taattcgtaatttaaagaggaaaagtaaacatgaaatgatacattgatttggatcagtataaccataatttatgctgtacttgtgtaagttnnnnnnnnn 328  Q
    || | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||             
T  45585855 tagtccgtaattttaagaggaaaagtaaacatgaaatgatacattgatttggatcaatataaccataatttatgctgtacttgtgtaagttaaaattttt 45585954  T
Q  329 tattttgatgttggatgaaaaacaaaatttagttaagttaatgactattgatgaggcaaaggttacagtggatggggtctcatatttgatgtgtgaattg 428  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  45585955 ttttttgatgttggatgaaaaacaaaatttagttaagttaatgactattgatgaagcaaaggttacagtggatggggtctcatatttgatgtgtgaattg 45586054  T
Q  429 tgggttaaaagttccacatcgaatagaaaaatagatattaaatagtatatatttaagtaagatgtttcttaggttaggttgaatatgagacttgaattta 528  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  45586055 tgggttaaaagttccgcatcgaatagaaaaatagatattaaatagtatatatttaagcaagatgtttcttaggttaggttgaatatgagacttgaattga 45586154  T
Q  529 atatgtggtgtttaaatttctctcattctaatttcagtataat 571  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  45586155 atatgtggtgtttaaatttctctaattctaatttcagcataat 45586197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 8529952 - 8529844
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||        ||||||||||| || |||||||||| | ||    
T  8529952 aaaagttaacatattaacatggtaaacgatcatataatacttcaatcacacttaatttatttaaaaaaaacatgttatatagtttgtaatttaaaaaaga 8529853  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  8529852 aaagtaaac 8529844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 32951409 - 32951517
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||       |||||| |||| | ||||||||||| | ||    
T  32951409 aaaagttaacatattaacatgataaacgatcgtataatacttcaatcacacttaatttattttagaaaaacatgttctatagtccgtaatttaaaaacga 32951508  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  32951509 aaagtaaac 32951517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 153 - 257
Target Start/End: Complemental strand, 30010482 - 30010378
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaa 252  Q
    ||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||||       ||||||||||| | ||||||||||| | |||||    
T  30010482 agttaacatattaacattataaacgatcatataatacttcaaccacacttaatttattttagaaaaacatgttatatagtccgtaatttaaacaagaaaa 30010383  T
Q  253 gtaaa 257  Q
    |||||    
T  30010382 gtaaa 30010378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 50744375 - 50744434
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  50744375 agttaacatattaacatgataaacgatcatataatacttcaatcacacttaatttatttt 50744434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 51597821 - 51597713
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||       ||||||||||| | ||| ||||||| | ||    
T  51597821 aaaagttaacatattaagatgataaacaatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtgatttaaaaaaga 51597722  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  51597721 aaagtaaac 51597713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 40095024 - 40095086
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  40095024 aaaagttaacaaattaacatgataaacgatcatataatacttcaatcacacttaatttatttt 40095086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 10392025 - 10391917
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||||||||||| ||||||| |||||  |||||| ||||||||||||       ||||| ||||| | ||||||||||| | ||    
T  10392025 aaaagttaacatattaacatgataaacggtcatataatactttaatcacaattaatttattttagaaaaacatgtaatatagtccgtaatttaaaaatga 10391926  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  10391925 aaagtaaac 10391917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 36285627 - 36285727
Alignment:
Q  112 atcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattt 211  Q
    ||||||||||||||||  | | |||||||||       |||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |||||    
T  36285627 atcatttttaaattacgaacactataaaatattttttaaaaagttaacatattaacatgataaacgatcatataatacttcaatcacacttgatatattt 36285726  T
Q  212 t 212  Q
    |    
T  36285727 t 36285727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 41498557 - 41498498
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttat 209  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  41498557 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacacttaacttat 41498498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 49946642 - 49946741
Alignment:
Q  113 tcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||| || | |||||||||       ||||||||||||||||||||||||||  |||||||| |||||| |||||| ||||||||||||    
T  49946642 tcatttttaaattacggacactataaaatatttttttaaaagttaacatattaacatgataaattatcatataatacttcaatcacatttaatttatttt 49946741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 41676427 - 41676370
Alignment:
Q  155 ttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||    
T  41676427 ttaacatattaacatgataaacgatcatataatactacaatcacacttaatttatttt 41676370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 2859023 - 2859131
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||| | |||| |||||| |||||||| |||||| |||||||||||||||||||       ||||||||||| | ||||||||||| |  |    
T  2859023 aaaagttaacatacttacattataaacaatcatataatacttcaatcacacttaatttatttttgaaaaacatgttatatagtccgtaatttaaaaaata 2859122  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  2859123 aaagtaaac 2859131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 35349553 - 35349661
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||||||||| |||||||| |||||| || || |||| ||||||||        |||||||||| | ||||||||||| | ||    
T  35349553 aaaagttaacatattaacatgataaacaatcatataatacttcaataacccttagtttattttagaaaaaaatgttatatagtccgtaatttaaaaacga 35349652  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  35349653 aaagtaaac 35349661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 42230690 - 42230629
Alignment:
Q  151 aaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||| |||||||||| |||||| |||||||| |||||| |||||||||||||||||||    
T  42230690 aaagttaaaatattaacataataaacaatcatataatacttcaatcacacttaatttatttt 42230629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 7444648 - 7444596
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacactt 202  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  7444648 aaaagttaacatattaacataataaacgatcatataatacttcaatcacactt 7444596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 44211011 - 44211058
Alignment:
Q  165 aacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  44211011 aacatgataaacgatcatataatacttcaatcacacttaatttatttt 44211058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 490 - 537
Target Start/End: Original strand, 45584646 - 45584693
Alignment:
Q  490 atgtttcttaggttaggttgaatatgagacttgaatttaatatgtggt 537  Q
    |||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  45584646 atgtttcttaggctagattgaatatgagacttgaattaaatatgtggt 45584693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 20576225 - 20576269
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatca 197  Q
    |||||| |||||||||||||||||||||||||| |||||| ||||    
T  20576225 agttaatatattaacatgataaacgatcatataatacttcaatca 20576269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 42742416 - 42742463
Alignment:
Q  165 aacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||   |||||||||||||| |||||||||||||||||||    
T  42742416 aacatgataaatagtcatatagtacttcaatcacacttaatttatttt 42742463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 6563727 - 6563668
Alignment:
Q  152 aagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||| |||||||||||||||| ||||||||| || ||| || |||| |||||||||||    
T  6563727 aagttaatatattaacatgataaa-gatcatataataattcaatgacacataatttatttt 6563668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 12234162 - 12234069
Alignment:
Q  151 aaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    ||||||| ||||||||||| ||| | ||||||||  ||| || ||||||||| |||||||||       ||||||||||| | |||||||||||    
T  12234162 aaagttagcatattaacataatatatgatcatattatacatcaatcacacttgatttattttagaaaaacatgttatatagtccgtaatttaaa 12234069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 11575497 - 11575605
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||       |||||||||||||| |||||||||| | ||    
T  11575497 aaaagttaacatattaacatgataaacgatcatataatactttaatcacacttaatttattttagaaaaacatgttatataatttgtaatttaaaaatga 11575596  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  11575597 aaagtaaac 11575605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 7503045 - 7503153
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||||||||| |||||||| |||||  |||||||||||||||||||       ||||||||||||| | ||||||||| | ||    
T  7503045 aaaagttaacatattaacatgataaacaatcatataatactttaatcacacttaatttattttagaaaaacatgttatataatccataatttaaaaacga 7503144  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  7503145 aaagtaaac 7503153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 16653102 - 16652994
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||  ||||||||||||||| |||||| ||||||||| |||||||||       ||||||||||| | ||||||||||| | ||    
T  16653102 aaaagttaacatattaacaaaataaacgatcatataatacttcaatcacacttgatttattttataaaaacatgttatatagtccgtaatttaaaaaaga 16653003  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  16653002 aaagtaaac 16652994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 1026940 - 1027002
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  1026940 aaaagttaacatattaacatgataaacgatcatataatacttcaatcatacttaatttatttt 1027002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 31543163 - 31543271
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| |||||||||||||||||||       ||||||||||  | | ||||||||| | ||    
T  31543163 aaaagttaacatattaacatcataaacggtcatataatacttcaatcacacttaatttattttagaaaaacatgttatatggtccataatttaaaaaaga 31543262  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  31543263 aaagtaaac 31543271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 40990278 - 40990369
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||||       ||||||||||| | |||||||||||    
T  40990278 agttaacatattaacatgataagcgatcatataatacttcaatcagacttaatttattttaaagaaacatgttatatagtccgtaatttaaa 40990369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 41103611 - 41103705
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaagtaaac 258  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||       |||||||||||  | |||||||||| | |||||||||||    
T  41103611 taacatgataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagcttgtaatttaaaaaagaaaagtaaac 41103705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 31738613 - 31738516
Alignment:
Q  113 tcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatt 210  Q
    ||||||||||||||| || | |||||||||       || ||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||    
T  31738613 tcatttttaaattacggacactataaaatattttttgaagagttaacatattaacatgataaatgatcatataatacttcaattacacttaatttatt 31738516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 11785716 - 11785571
Alignment:
Q  113 tcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||| || ||||| |||||       |||||||| |||||||||||||||||| | |||||| |||||| ||| || ||||| ||||||    
T  11785716 tcatttttaaattacggacattatgaaatattttttaaaaagttagcatattaacatgataaacaaacatataatacttcaatcgcaattaatgtatttt 11785617  T
Q  213 nnnnnnncatgttatataattcgtaatttaaagaggaaaagtaaac 258  Q
           ||||||||||| ||| ||||||||| | |||||||||||    
T  11785616 agaaaaacatgttatatagttcataatttaaaaaagaaaagtaaac 11785571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 37032532 - 37032424
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||| ||||||||| |||||||| |||||  |||||||||||||||||||       ||||||||||| |  |||||||||| | ||    
T  37032532 aaaagttaacatattaagatgataaactatcatataatactttaatcacacttaatttattttaaaaaaacatgttatatagtctgtaatttaaaaaaga 37032433  T
Q  250 aaagtaaac 258  Q
    ||| |||||    
T  37032432 aaaataaac 37032424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 42650443 - 42650535
Alignment:
Q  166 acatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaagtaaac 258  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||||       ||||||||||| | ||||||||||| | |||||||||||    
T  42650443 acatgataaacaatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatattccgtaatttaaaaacgaaaagtaaac 42650535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 6315215 - 6315153
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||| ||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||    
T  6315215 aaaaattaacatattaacttgataaacgatcgtataatacttcaatcacacttaatttatttt 6315153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 29691013 - 29691067
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaa 204  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  29691013 aaaagttaacatattaacatgataaacgatcatatgatacttcaatcacacttaa 29691067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 30664514 - 30664452
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||| |||||||||| | ||||| |||||| |||||||||||||||||||    
T  30664514 aaaagttaacatattaatatgataaacggttatataatacttcaatcacacttaatttatttt 30664452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 36308996 - 36308934
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||| |||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||    
T  36308996 aaaagtaaacatattaacatgataaacaatcatataatacttcaatcacacttagtttatttt 36308934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 4247610 - 4247670
Alignment:
Q  152 aagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||| ||||||||||||||||||| |||||  |||| ||||||||||||||    
T  4247610 aagttaacatattagcatgataaacgatcatataatacttaaatcatacttaatttatttt 4247670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 29358430 - 29358490
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatt 210  Q
    |||| ||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||    
T  29358430 aaaaattaacatattaacattataaacgatcctataatacttcaatcacacttaatttatt 29358490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 1281296 - 1281188
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| | ||||||| |||||| ||       ||||||||||  | ||||||||||| | ||    
T  1281296 aaaagttaacatattaacataataaacgataatataatacttcaaccacacttgatttatcttagaaaaacatgttatatcgtccgtaatttaaaaaaga 1281197  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  1281196 aaagtaaac 1281188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 9718570 - 9718678
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||| |||||||||||||||||| |||||||| |||||| |||||| |||||  |||||        |||||||||| ||| ||||||||| | ||    
T  9718570 aaaagttagcatattaacatgataaacaatcatataatacttcaatcacaattaatgaattttagaaaaatatgttatatagttcataatttaaaaaaga 9718669  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  9718670 aaagtaaac 9718678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 11033570 - 11033462
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||| ||||||||||||||||||||||||||||||| |  ||| ||||||| |||||||||||       |||| |||||| | ||| ||||||| | ||    
T  11033570 aaaaattaacatattaacatgataaacgatcatataattattcaatcacacataatttattttagaaaaacatgatatatagtccgttatttaaaaaaga 11033471  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  11033470 aaagtaaac 11033462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 28083892 - 28083833
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||| | |||||||||||| |||||||| |||| | |||||||||||||||||||    
T  28083892 agttaacatgtcaacatgataaacaatcatataatactccaatcacacttaatttatttt 28083833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 33922673 - 33922565
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||| |||||||||| |||||||  |||||| |||| ||| ||||||||||        |||||||||| | || |||||||| | ||    
T  33922673 aaaagttaacatattatcatgataaacaatcatatcatacttcaatcatactaaatttattttaaaaaaatatgttatatagtccggaatttaaaaaaga 33922574  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  33922573 aaagtaaac 33922565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 7979288 - 7979185
Alignment:
Q  155 ttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaagt 254  Q
    ||||| |||||||||||||||  |||||||| |||||| ||  ||||| |||||||||       ||||||||||| | ||||||||||| | |||||||    
T  7979288 ttaacttattaacatgataaataatcatataatacttcaattgcacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagt 7979189  T
Q  255 aaac 258  Q
    ||||    
T  7979188 aaac 7979185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 30479808 - 30479870
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||  ||||||| ||| ||||| |||||| ||||||||| |||||||||    
T  30479808 aaaagttaacatattaaggtgataaatgataatataatacttcaatcacacttgatttatttt 30479870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 24243152 - 24243199
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacacttaatttattt 211  Q
    |||||||||||| ||||||||| |||||| ||||||||||||| ||||    
T  24243152 taacatgataaatgatcatataatacttcaatcacacttaattaattt 24243199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 30581916 - 30581963
Alignment:
Q  165 aacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||| ||||||||| |||||| |||||||||||||| ||||    
T  30581916 aacatgataaatgatcatataatacttcaatcacacttaatttgtttt 30581963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 37923172 - 37923231
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||| |||||||||||||||| ||||||||| || ||  ||| |||||||||||||||    
T  37923172 agttaaaatattaacatgataaatgatcatataatattttaatcgcacttaatttatttt 37923231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 2248605 - 2248511
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||||| |||||||||  |||||| ||||||| || | | ||||||||| |||||||||       ||||||||||||  |||||||||||    
T  2248605 aaaagttaacttattaacatcgtaaacggtcatataatattccaatcacacttgatttattttagaaaaacatgttatataaaccgtaatttaaa 2248511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 141
Target Start/End: Original strand, 35694784 - 35694812
Alignment:
Q  113 tcatttttaaattacagatattataaaat 141  Q
    |||||||||||||||||||||||||||||    
T  35694784 tcatttttaaattacagatattataaaat 35694812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 24970219 - 24970350
Alignment:
Q  113 tcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||| |||| ||| |||||       |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||    
T  24970219 tcatttttaaattacggatactatgaaatattttttaaaaagttaacatattaacttgataaacgatcatataatacttcaatcacacttaatttatttt 24970318  T
Q  213 nnnnnnncatgttatataattcgtaatttaaa 244  Q
           ||||||||||||| | |||||||||    
T  24970319 agaaaaacatgttatataatccataatttaaa 24970350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 43230389 - 43230281
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||||||||||||| |||| | |||| ||| |||||||||||||||       ||||||||||||| ||||||||||| | ||    
T  43230389 aaaagttaacatattaacatgataaacgatcgtataattcttcaatcgcacttaatttattttagaaaaacatgttatataatccgtaatttaaaaaaga 43230290  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  43230289 aaagtaaac 43230281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 34235098 - 34235208
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt-nnnnnnncatgttatataattcgtaatttaaagagg 248  Q
    ||||||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||        ||||||||||||| ||||||||||| | |    
T  34235098 aaaagttaacatattaatatgataaacaatcatataatacttcaatcacacttaatttattttagaaaaaacatgttatataatccgtaatttaaaaatg 34235197  T
Q  249 aaaagtaaaca 259  Q
    |||||||||||    
T  34235198 aaaagtaaaca 34235208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 33655199 - 33655307
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||       |||||||||||   | ||||||||| | ||    
T  33655199 aaaagttaacatattaacatgataaatgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagcccataatttaaaaaaga 33655298  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  33655299 aaagtaaac 33655307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 41497048 - 41497156
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||| ||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||||       ||||||||||| | ||||||||||| | ||    
T  41497048 aaaatttaacatattaacatgataaatgatcatataattcttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaaga 41497147  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  41497148 aaagtaaac 41497156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 22163206 - 22163262
Alignment:
Q  156 taacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  22163206 taacatattaacatgataaacgatcatataatacttcaatcacacttaatttatttt 22163262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 22221914 - 22221970
Alignment:
Q  156 taacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  22221914 taacatattaacatgataaacgatcatataatacttcaatcacacttaatttatttt 22221970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 37417724 - 37417832
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||| |||       ||||||||||| | ||| ||||||| | ||    
T  37417724 aaaagttaacatattcacatgataaacgatcatataatacttcaatcacacttaacttaattttgaaaaacatgttatatagtccgttatttaaaaatga 37417823  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  37417824 aaagtaaac 37417832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 40196623 - 40196731
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||| ||| |||||||| |||||||| |||||| |||||||||||||||||||       ||||||||||| | ||||||||||| |  |    
T  40196623 aaaagttaacatatcaacctgataaacaatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatattccgtaatttaaaaacaa 40196722  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  40196723 aaagtaaac 40196731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 13771037 - 13771145
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||||||||| || |||||  |||   |||||||||||||||||||       ||||||||||| | ||||||||||| | ||    
T  13771037 aaaagttaacatattaacatgataaacaatgatataacactcgaatcacacttaatttattttaaaaaaacatgttatatagtccgtaatttaaaaacga 13771136  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  13771137 aaagtaaac 13771145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 34228409 - 34228517
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataatt-cgtaatttaaagagg 248  Q
    ||||||||||||||||| ||||||| | |||||||| |||||| |||||||||||||||||||       ||||||||||| || |||||||| || | |    
T  34228409 aaaagttaacatattaatatgataagcaatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagttccgtaattttaaaatg 34228508  T
Q  249 aaaagtaaa 257  Q
    |||||||||    
T  34228509 aaaagtaaa 34228517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 41008334 - 41008274
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||||    
T  41008334 aaaagttaacatattaacatgataaacaatcatata--acttcaatcacacttaatttatttt 41008274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 1051590 - 1051696
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||| |||||||||| |||||||| | |||| |||||||||||||||||||       || |||||||| ||||||||||||| | ||    
T  1051590 aaaagttaacatatta-catgataaacaatcatataatgcttcaatcacacttaatttattttagaaaaacaggttatatagttcgtaatttaaaaaaga 1051688  T
Q  250 aaagtaaa 257  Q
    ||| ||||    
T  1051689 aaaataaa 1051696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 17853009 - 17852918
Alignment:
Q  165 aacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaagtaa 256  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||||       |||||||| |||| ||||||||||| | |||||||||    
T  17853009 aacatgataaacgatcatataatacctcaatcacacttaatttattttagaaaaacatgttatttaatccgtaatttaaaaaagaaaagtaa 17852918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 25887345 - 25887283
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||| ||||||||| |||||||| |||| | |||||||||||||||||||    
T  25887345 aaaagttaacatattaatatgataaacaatcatataatactccaatcacacttaatttatttt 25887283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 13425176 - 13425273
Alignment:
Q  115 atttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||| | || ||||||       |||||| |||||||||||||||||||| |||||||  ||||||  ||||||||||||||||||    
T  13425176 atttttaaattacagacactacaaaatattttttcaaaagtcaacatattaacatgataaacaatcatattatacttcattcacacttaatttatttt 13425273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 47391005 - 47390900
Alignment:
Q  154 gttaacatattaacatgataaacga-tcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaa 252  Q
    ||||||||||||||||||||||| | ||||||| |||||| |||||| ||||| ||||||       ||||||||||| ||| ||||||||| | |||||    
T  47391005 gttaacatattaacatgataaacaagtcatataatacttcaatcacaattaatgtattttagaaaaacatgttatatagttcataatttaaaaaagaaaa 47390906  T
Q  253 gtaaac 258  Q
    ||||||    
T  47390905 gtaaac 47390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 4833622 - 4833684
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||| |||||||||||||||| |||||||| |||||  |||||| ||||||||||||    
T  4833622 aaaagttaacctattaacatgataaacaatcatataatacttaaatcacatttaatttatttt 4833684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 18231739 - 18231697
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttc 192  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  18231739 aaaagttaacatattaacatgataaacgatcatataatacttc 18231697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 40572325 - 40572387
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||| | ||||||| |||||  ||||| |||||||||||||    
T  40572325 aaaagttaacatattaacatgataaaaggtcatataatactttaatcacgcttaatttatttt 40572387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 18063667 - 18063714
Alignment:
Q  165 aacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||||    
T  18063667 aacatgataaatgatcatataatacttcaatcacacttaatttatttt 18063714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 19261945 - 19261992
Alignment:
Q  165 aacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  19261945 aacatgataaatgatcatatagtacttcaatcacaattaatttatttt 19261992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 241
Target Start/End: Complemental strand, 42087148 - 42087057
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaattt 241  Q
    |||||||| ||||||||| ||| ||||||| ||||| || ||| || ||||||||||||||||        |||||||||||||||||||||    
T  42087148 aaaagttagcatattaacgtgacaaacgattatataataattcaattacacttaatttattttaaaataatatgttatataattcgtaattt 42087057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 39855975 - 39856064
Alignment:
Q  169 tgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaagtaaac 258  Q
    ||||||| ||||||||| |||||   ||||||||||||||||||       ||||||||||| | ||||||||||| | |||||||||||    
T  39855975 tgataaatgatcatataatacttaagtcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaagtaaac 39856064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 10315786 - 10315735
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacact 201  Q
    |||| |||||||||||||| |||||||||| ||||| |||||| ||||||||    
T  10315786 aaaatttaacatattaacaagataaacgattatataatacttcaatcacact 10315735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 18127347 - 18127390
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacacttaattt 207  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||    
T  18127347 taacatgataaatgatcatataatacttcaatcacacttaattt 18127390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 20393740 - 20393693
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacacttaatttattt 211  Q
    |||||| ||||| ||||||||| |||||| ||||||||||||||||||    
T  20393740 taacattataaatgatcatataatacttcaatcacacttaatttattt 20393693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 32872838 - 32872898
Alignment:
Q  116 tttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaac 176  Q
    ||||||||||||  |||||||||||||       |||||||||||||||||||||||||||    
T  32872838 tttttaaattacgaatattataaaatactttttaaaaagttaacatattaacatgataaac 32872898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 31571569 - 31571614
Alignment:
Q  160 atattaacatgataaacgatcatatagtacttcgatcacacttaat 205  Q
    ||||||||||||||||| || ||||| |||||| ||||||||||||    
T  31571569 atattaacatgataaacaattatataatacttcaatcacacttaat 31571614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 41110412 - 41110520
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||       |||||||| || | ||||||||||| | ||    
T  41110412 aaaagttaacatattaacatgataaacaatcatataatacttcaatcacacttaatttattttcgaaaaacatgttatctagtccgtaatttaaaaacga 41110511  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  41110512 aaagtaaac 41110520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 24560370 - 24560308
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  24560370 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacatttaatttatttt 24560308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 41040041 - 41040149
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||||||||| |||||||| |||||| ||||| |||| ||||||||       |||||||| |||| |||||||||||   ||    
T  41040041 aaaagttaacatattaacatgataaacaatcatataatacttcaatcacgcttactttattttaaaaaatcatgttatctaatccgtaatttaaaagcga 41040140  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  41040141 aaagtaaac 41040149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 9312525 - 9312624
Alignment:
Q  113 tcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||| | ||| |||||       ||||||||||||||||||||||||||| |||||||| ||||   |||||||||||||||||||    
T  9312525 tcatttttaaattacagacactatgaaatattttgtaaaaagttaacatattaacatgataaacaatcatataatactcaaatcacacttaatttatttt 9312624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 18654694 - 18654785
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    ||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||||       ||||||||||| | |||||||||||    
T  18654694 agttaacatattaacatgataaatgatcatataatacttcaattacacttaatttattttagagaaacatgttatatagtccgtaatttaaa 18654785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 46205033 - 46204930
Alignment:
Q  156 taacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaagta 255  Q
    ||||||||||| ||| |||| ||||||||| |||||| |||||||||||||||||||       ||||||||||| ||| ||||||||| | ||||||||    
T  46205033 taacatattaatatgttaaatgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagttcataatttaaaaaagaaaagta 46204934  T
Q  256 aaca 259  Q
    ||||    
T  46204933 aaca 46204930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 14898128 - 14898067
Alignment:
Q  151 aaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||| ||||||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  14898128 aaagttaatatattaacacgataaacgatcatataatacttcaatcacacttaatttatttt 14898067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 37807233 - 37807176
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaattt 207  Q
    ||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  37807233 aaaagttaatatattaacatgataaacgatcatataatacttcaatcacacttaattt 37807176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 21773935 - 21773830
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||| ||||||||||| |||||||| | |||| |||||||||||||||||||       ||||||||||| | ||||||||| | | ||    
T  21773935 aaaagttaacatatttacatgataaacaatcatataattcttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttagaaaaga 21773836  T
Q  250 aaagta 255  Q
    ||||||    
T  21773835 aaagta 21773830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 27542028 - 27542084
Alignment:
Q  156 taacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  27542028 taacatattaacatgataaacgatcatataatacttcaatcacagttaatttatttt 27542084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 52185169 - 52185060
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt-nnnnnnncatgttatataattcgtaatttaaagagg 248  Q
    ||||||||||||||||||||||||||| |||||||| |||||| || | | ||||||||||||        |||||||||||||| |||||||||| | |    
T  52185169 aaaagttaacatattaacatgataaacaatcatataatacttcaattatatttaatttattttagaaaaaacatgttatataatttgtaatttaaaaacg 52185070  T
Q  249 aaaagtaaac 258  Q
    ||||||||||    
T  52185069 aaaagtaaac 52185060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 36568994 - 36569056
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||||||||| ||| |||| || ||| |||||||||||||||||||    
T  36568994 aaaagttaacatattaacatgataaacaatcgtataatagttcaatcacacttaatttatttt 36569056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 52474068 - 52473974
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    ||||||||||||||||| |||||||||  ||||||| |||||| ||||||  |||||||||||       ||||||||||||| |||||||||||    
T  52474068 aaaagttaacatattaatatgataaacagtcatataatacttcaatcacatgtaatttattttaaaataacatgttatataatccgtaatttaaa 52473974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 30200179 - 30200290
Alignment:
Q  150 aaaagttaacatattaacatgataaac---gatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaaga 246  Q
    ||||||| |||||||||||| ||||||   |||||||||||||||  ||||||||| |||||||||       ||||||||||| | ||||||||||| |    
T  30200179 aaaagtttacatattaacataataaacaacgatcatatagtactttaatcacacttgatttattttagaaaaacatgttatatagtccgtaatttaaaaa 30200278  T
Q  247 ggaaaagtaaac 258  Q
     |||||||||||    
T  30200279 agaaaagtaaac 30200290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 16275796 - 16275858
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||| |||||||||||||||| | |||||| |||||| ||||||||| |||||||||    
T  16275796 aaaagttaacttattaacatgataaacaaccatataatacttcaatcacacttgatttatttt 16275858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 13082953 - 13083010
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaattt 207  Q
    |||||||||||||||||||| ||||||||||||||| |||||| || |||||| ||||    
T  13082953 aaaagttaacatattaacataataaacgatcatataatacttcaattacacttcattt 13083010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 25655064 - 25655157
Alignment:
Q  153 agttaacatattaacatgataaacgatc--atatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||||||||| |||||||| ||||  ||||| |||||| |||||||||||||||||||       ||||||||||| | |||||||||||    
T  25655064 agttaacatattaatatgataaatgatcatatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaa 25655157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 2387853 - 2387913
Alignment:
Q  152 aagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||| ||| |||||||||||||||||||||| || ||  |||||||||||||||||||    
T  2387853 aagttaaaataataacatgataaacgatcatataataatttaatcacacttaatttatttt 2387913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 37237061 - 37237013
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  37237061 taacatgataaatgatcatttagtacttcaatcacacttaatttatttt 37237013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 220488 - 220595
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||| |||||| ||| ||||  ||||| |||| |||| |||||||||       ||||||| ||| | ||||||||||| | ||    
T  220488 aaaagttaacatattaacataataaacaatcttataacacttcaatcatacttgatttattttagaaaaacatgttacatagtccgtaatttaaaaaaga 220587  T
Q  250 aaagtaaa 257  Q
    ||||||||    
T  220588 aaagtaaa 220595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 37102240 - 37102301
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||| |||| |||||||||| |||||| | ||||||| |||||||||    
T  37102240 aaaagttaacatattaacataataa-cgatcatataatacttcaaccacacttgatttatttt 37102301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 51819228 - 51819278
Alignment:
Q  162 attaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||| |||| |||||| |||||||| ||||||||||    
T  51819228 attaacatgataaacgatcgtataatacttcaatcacactaaatttatttt 51819278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 12790525 - 12790465
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatt 210  Q
    |||| |||| ||| ||||||||| || ||||||||| ||||||||| ||||||||||||||    
T  12790525 aaaaattaaaataataacatgatgaaagatcatatattacttcgattacacttaatttatt 12790465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 43005830 - 43005892
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||| ||||||||  |||||||| |||||| |||| | | ||||||||||    
T  43005830 aaaagttaacatattaatatgataaaatatcatataatacttcaatcaaattaaatttatttt 43005892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 28582610 - 28582708
Alignment:
Q  160 atattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaagtaaac 258  Q
    |||||||||| ||||||||| ||||| |||||| | ||||||| |||||| ||       ||||||||||  | ||||||||||| | |||||||||||    
T  28582610 atattaacataataaacgataatataatacttcaaccacacttgatttatcttagaaaaacatgttatatcgtccgtaatttaaaaaagaaaagtaaac 28582708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 46556298 - 46556234
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatc--atatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||| |||||||||||| ||||| ||  ||||| |||||| |||||||| ||||||||||    
T  46556298 aaaagttaagatattaacatgacaaacggtcatatataatacttcaatcacactcaatttatttt 46556234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 4097603 - 4097665
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  4097603 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacacttaatttatttt 4097665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 33236104 - 33235996
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||||||||| |||||||| | |||| ||||  |||||||||||||       ||||||||||| | ||||||||||| | ||    
T  33236104 aaaagttaacatattaacatgataaacaatcatataattcttcaatcagtcttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaaga 33236005  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  33236004 aaagtaaac 33235996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 1300773 - 1300714
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttat 209  Q
    |||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||    
T  1300773 aaaagttaacatattaacctgataaacaatcatataatacttcaatcacacttaatttat 1300714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 21606935 - 21606997
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||||||||||||| |||| ||||||  |||||||| |||||||||    
T  21606935 aaaagttaacatattaacatgataaacgatcgtataatacttcagtcacactttatttatttt 21606997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 34176487 - 34176397
Alignment:
Q  151 aaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaattt 241  Q
    ||||||||||||||||||| |||||||||| |||| |||| | ||||||||| |||||||||       ||||||||||||| ||||||||    
T  34176487 aaagttaacatattaacataataaacgatcgtataatactgcaatcacacttgatttattttagaaaaacatgttatataatccgtaattt 34176397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 30487396 - 30487458
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||| |||||||||||||||||||| || ||||| |||||| ||||||||| |||||||||    
T  30487396 aaaagtcaacatattaacatgataaacaataatataatacttcaatcacacttgatttatttt 30487458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 13583872 - 13583778
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||| ||||||| ||||||| ||||| ||||||||| || ||| |||||||||||||||||||       |||||||||||||  ||||||||||    
T  13583872 aaaaattaacatgttaacataataaatgatcatataatatttcaatcacacttaatttattttagaaaaacatgttatataatctgtaatttaaa 13583778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 5585393 - 5585486
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaa 243  Q
    ||||| |||||||||||||| ||||||||| ||| | || ||| |||||||||||||||||||       ||||||||||| | ||||||||||    
T  5585393 aaaaggtaacatattaacataataaacgattatacaatatttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaa 5585486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 14515621 - 14515562
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||| ||||||||||| ||| ||||| ||||||  ||||||||||||||||||    
T  14515621 agttaacatatgaacatgataaatgataatataatacttcattcacacttaatttatttt 14515562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 19278139 - 19278223
Alignment:
Q  160 atattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||||||||||||||||||||  |||||| |||| ||| ||||||||||       ||||||||||| | |||||||||||    
T  19278139 atattaacatgataaacgatcatatgatacttcaatcagactaaatttattttagaaaaacatgttatatagtccgtaatttaaa 19278223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 32926784 - 32926737
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacacttaatttattt 211  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  32926784 taacatgataaatgatcatataatacttcaatcacacttaatttattt 32926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 1390472 - 1390411
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||| ||||| ||| || ||| |||| ||||||||||||||    
T  1390472 aaaagttaacatattaacatgataaatgatca-ataatatttcaatcaaacttaatttatttt 1390411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 1395789 - 1395727
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||| ||||||||||| ||||||||| |||||| || || ||| |||||||||||||||||||    
T  1395789 aaaaattaacatattagcatgataaatgatcatgtattatttcaatcacacttaatttatttt 1395727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 9719122 - 9719180
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaattta 208  Q
    |||||||||||||||||  |||||||| |||||||| |||||| |||||||| ||||||    
T  9719122 aaaagttaacatattaatttgataaacaatcatataatacttcaatcacactaaattta 9719180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 10348852 - 10348951
Alignment:
Q  113 tcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||| |||| ||| |||||       ||||||||||||||||| | |||||||||| ||||| |||||| ||| ||||| | |||||||    
T  10348852 tcatttttaaattacggataatatgaaatatcttttaaaaagttaacatattaatacgataaacgataatataatacttcaatcgcacttgaattatttt 10348951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 25741560 - 25741498
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||| ||| ||||||||||||||||||  |||||  |||| |||||||||||||    
T  25741560 aaaagttaacataataatatgataaacgatcatataaaacttcagtcacgcttaatttatttt 25741498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 31849263 - 31849201
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||| ||||||||||||| |||||||| || ||||| |||||| ||||||||| |||||||||    
T  31849263 aaaaattaacatattaacgtgataaacaataatataatacttcaatcacacttgatttatttt 31849201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 665937 - 665994
Alignment:
Q  155 ttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||| ||| ||||| |||||| | |||||||||||| ||||    
T  665937 ttaacatattaacatgataaatgatgatataatacttcaaccacacttaatttttttt 665994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 10818364 - 10818315
Alignment:
Q  155 ttaacatattaacatgataaacgatcatatagtacttcgatcacacttaa 204  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||| ||||    
T  10818364 ttaacatattaacatgataaatgatcatataatacttcaatcacatttaa 10818315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 9721229 - 9721280
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacact 201  Q
    |||||||||||||||||  |||||||| |||||||| |||||| ||||||||    
T  9721229 aaaagttaacatattaatttgataaacaatcatataatacttcaatcacact 9721280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 32922484 - 32922437
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacacttaatttattt 211  Q
    ||||||||||||  |||||||| ||||||||||||||||||| |||||    
T  32922484 taacatgataaataatcatataatacttcgatcacacttaatatattt 32922437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 2892694 - 2892756
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||| |||| ||| ||||||||||||| |||||||| || ||| |||||||| ||||||||||    
T  2892694 aaaaattaaaataataacatgataaacaatcatataatatttcaatcacactaaatttatttt 2892756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 16738092 - 16738195
Alignment:
Q  155 ttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaagt 254  Q
    |||| ||| |||||||||| ||||||||||| |||||  || ||||||| ||||||||       ||| |||||||||  |||||||||| | |||||||    
T  16738092 ttaaaataataacatgatatacgatcatataatacttaaataacacttactttattttagaaaaacattttatataatctgtaatttaaaaaagaaaagt 16738191  T
Q  255 aaac 258  Q
    ||||    
T  16738192 aaac 16738195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 2892948 - 2892985
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacact 201  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  2892948 taacatgataaacgatcatataatacttcaatcacact 2892985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 2900061 - 2900028
Alignment:
Q  152 aagttaacatattaacatgataaacgatcatata 185  Q
    ||||||||||||||||||||||||| ||||||||    
T  2900061 aagttaacatattaacatgataaacaatcatata 2900028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 12811085 - 12811133
Alignment:
Q  163 ttaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||| |||||||  |||||| |||||||||||||||||||    
T  12811085 ttaacatgataaacaatcatatc-tacttcaatcacacttaatttatttt 12811133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 30850008 - 30850097
Alignment:
Q  155 ttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||| ||| |||||||||||||||||||||| |||||| || | ||| ||||| ||||       ||| ||||||||||| |||||||||    
T  30850008 ttaaaataataacatgataaacgatcatataatacttcaattatactaaatttgttttaaaaaaacatattatataattcataatttaaa 30850097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 36151729 - 36151667
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  36151729 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacacttaatttatttt 36151667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 54935222 - 54935113
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatat-agtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagg 248  Q
    |||||||| |||||||| ||||||||||||||||| | |||||| |||||||||||||||||||       ||||||||||| ||||||||||||| | |    
T  54935222 aaaagttatcatattaatatgataaacgatcatataaatacttcaatcacacttaatttattttagaaaaacatgttatatagttcgtaatttaaaaaag 54935123  T
Q  249 aaaagtaaac 258  Q
    ||||||||||    
T  54935122 aaaagtaaac 54935113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 26167087 - 26167028
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  26167087 agttaacatattaacatgataaacgatcatataatacttcaatcacacttaatttatttt 26167028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 45132592 - 45132654
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  45132592 aaaagttaacatattaaaatgataaacgatcatataatacttcaatcacacttaatttatttt 45132654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 45742043 - 45741981
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  45742043 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacatttaatttatttt 45741981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 27735895 - 27735790
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaa 252  Q
    ||||| ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||       ||||||||||| | ||||||||||| | |||||    
T  27735895 agttagcatattaacatgataaatgatcatataatacttcaatcacacttaatttattttaaaaaaacatgttatatagtccgtaatttaaaaatgaaaa 27735796  T
Q  253 gtaaac 258  Q
     |||||    
T  27735795 ttaaac 27735790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 1968450 - 1968558
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||| | |||||||||       ||| ||||||| | ||||||||||| | ||    
T  1968450 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacacctgatttattttagaaaaacatattatatagtccgtaatttaaaaatga 1968549  T
Q  250 aaagtaaac 258  Q
    ||| |||||    
T  1968550 aaattaaac 1968558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 5730924 - 5731015
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    ||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||||       ||||||||||| | |||||||||||    
T  5730924 agttaacatattaacatgataaatgatcatataatacttcaattacacttaatttattttagagaaacatgttatatagtccgtaatttaaa 5731015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 16400953 - 16400891
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||||    
T  16400953 aaaagttaacatattaacatgataaacgatcatataatacttcaatcataattaatttatttt 16400891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 46007792 - 46007854
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||    
T  46007792 aaaagttaacatattaacatgataaatgatcatataatacttcaatctcacttaatttatttt 46007854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 35248839 - 35248745
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||||| |||||||||||||||  |||||||| |||||| |||||||||||||||||||       ||||||||||| | |||||||||||    
T  35248839 aaaagttaacgtattaacatgataaataatcatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaa 35248745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 6891513 - 6891405
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||| |||| ||| |||||| ||||||||||||||| |||||| |||||||||||||||||||       |||||||||||||| ||| |||||| | ||    
T  6891513 aaaaattaaaataataacattataaacgatcatataatacttcaatcacacttaatttattttagaaaaacatgttatataatttgtattttaaaaaaga 6891414  T
Q  250 aaagtaaac 258  Q
    ||| |||||    
T  6891413 aaaataaac 6891405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 31348412 - 31348520
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||| ||||||||||||||||||||| |||||||| || ||| ||||||| |||||||||||       ||||||||||| | ||| ||||||| | ||    
T  31348412 aaaagctaacatattaacatgataaacaatcatataataattcaatcacacataatttattttagaaaaacatgttatatagtccgttatttaaaaaaga 31348511  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  31348512 aaagtaaac 31348520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 37711286 - 37711202
Alignment:
Q  160 atattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||||||||||       ||||||||||| | |||||||||||    
T  37711286 atattaacatgataaatgatcatataatacttcaatcacacttaatttattttagagaaacatgttatatagtccgtaatttaaa 37711202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 54320587 - 54320525
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||| |||||||||||||||||| |||||||| |||| | |||||||||||||||||||    
T  54320587 aaaagttagcatattaacatgataaacaatcatataatactccaatcacacttaatttatttt 54320525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 17938198 - 17938259
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattt 211  Q
    |||| |||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||    
T  17938198 aaaatttaaaataataacatgataaacgatcatataatacttcaatcacacttaatttattt 17938259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 2917061 - 2917116
Alignment:
Q  157 aacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||||||||||| |||||| |||||| | ||||||||||    
T  2917061 aacatattaacatgataaacgatcatataatacttcaatcacaataaatttatttt 2917116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 49735559 - 49735667
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||| ||||||||||||||||||| ||||| || ||| ||||||||| |||||||||       ||||||||||| | |||| |||||| | ||    
T  49735559 aaaagttaacctattaacatgataaacgataatataatatttctatcacacttgatttattttagaaaaacatgttatatagtccgtagtttaaaaaaga 49735658  T
Q  250 aaagtaaac 258  Q
    ||| |||||    
T  49735659 aaactaaac 49735667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 44784141 - 44784087
Alignment:
Q  154 gttaacatattaacatgataaacgatcatatagtacttcgatcacacttaattta 208  Q
    |||||||||||||| | ||||||||||||||| |||||| |||||||||||||||    
T  44784141 gttaacatattaaccttataaacgatcatataatacttcaatcacacttaattta 44784087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 34110958 - 34110897
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattt 211  Q
    |||||||||||||||||||||||||||||||||||| || ||  | |||||||| |||||||    
T  34110958 aaaagttaacatattaacatgataaacgatcatataatattttaagcacacttactttattt 34110897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 47433800 - 47433861
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||| |||| ||| |||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  47433800 aaaaattaaaataataacat-ataaacgatcatataatacttcaatcacacttaatttatttt 47433861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 54745011 - 54745054
Alignment:
Q  165 aacatgataaacgatcatatagtacttcgatcacacttaattta 208  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||    
T  54745011 aacatgataaatgatcacatagtacttcaatcacacttaattta 54745054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 41174498 - 41174436
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||| ||||||||||| ||||| ||||||||| ||| || |||||| || |||||||||    
T  41174498 aaaagttagcatattaacataataaatgatcatataatacatcaatcacatttgatttatttt 41174436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 56135890 - 56135840
Alignment:
Q  162 attaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||| ||||||||| |||||| |  ||||||||||||||||    
T  56135890 attaacatgataaatgatcatataatacttcaaaaacacttaatttatttt 56135840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 28332948 - 28332899
Alignment:
Q  159 catattaacatgataaacgatcatatagtacttcgatcacacttaattta 208  Q
    ||||||||| || |||||||||||||| |||||| |||| ||||||||||    
T  28332948 catattaacctggtaaacgatcatataatacttcaatcatacttaattta 28332899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 23332650 - 23332686
Alignment:
Q  175 acgatcatatagtacttcgatcacacttaatttattt 211  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  23332650 acgatcatataatacttctatcacacttaatttattt 23332686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 36347635 - 36347740
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaa 252  Q
    |||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||       ||||||||||| | ||||||||||| | |||||    
T  36347635 agttaacatattaacatgataaacaattatataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaaaaagaaaa 36347734  T
Q  253 gtaaac 258  Q
    ||||||    
T  36347735 gtaaac 36347740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 12541949 - 12541857
Alignment:
Q  120 taaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||| ||||||||        ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  12541949 taaattacagatactataaaatgttttttaaaaagttaacacattaacatgataaacgatcatatagtacttcaatcgcacttaatttatttt 12541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 37739982 - 37740044
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  37739982 aaaagttaagatattaacatgataaacgatcatataatacttcaatcacacttaatttatttt 37740044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 39732820 - 39732882
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  39732820 aaaagttaacatattaacatgataaacgatcatataatacttcaatcatacttaatttatttt 39732882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 36566942 - 36567036
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||||| |       ||||||||||||||| |||||||||    
T  36566942 aaaagttaacatattaacatgataaatgatcatataatacttcaatcacaattaatttattatagaaaaacatgttatataattcataatttaaa 36567036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 15224785 - 15224893
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |       |||||||||||   ||||||||||| | ||    
T  15224785 aaaagctaacatattaacatgataaatgatcatataatacttcaatcacacttaatttattctagaaaaacatgttatatagcccgtaatttaaaaaaga 15224884  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  15224885 aaagtaaac 15224893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 23748248 - 23748140
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||       ||||||||||| | |||| |||||| | ||    
T  23748248 aaaagttaacatattaacatgataaacgataatataatacttcaatcacacttgatttatttttgaaaaacatgttatatagtccgtagtttaaaaaaga 23748149  T
Q  250 aaagtaaac 258  Q
    ||| |||||    
T  23748148 aaactaaac 23748140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 16565930 - 16565868
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||    
T  16565930 aaaagttaacatataaatatgataaacgatcatataatacttcaatcacacttaatttatttt 16565868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 2241563 - 2241501
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||| |||||||||||||||||||||| |||||||| |||||| || ||||||||||||||||    
T  2241563 aaaatttaacatattaacatgataaacaatcatataatacttcaattacacttaatttatttt 2241501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 17379965 - 17379903
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||| |||||||||||||||||| |||||||| |||| | |||||||||||||||||||    
T  17379965 aaaagttagcatattaacatgataaacaatcatataatactccaatcacacttaatttatttt 17379903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 42316855 - 42316909
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaa 204  Q
    |||||||||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  42316855 aaaagttaacgtattaacatgataaacgatcatataatacttcaatcacacttaa 42316909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 9631713 - 9631652
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattt 211  Q
    |||||||||||||||||||||||||||||| ||||| ||||||  |||||||| ||||||||    
T  9631713 aaaagttaacatattaacatgataaacgataatataatacttcattcacacttgatttattt 9631652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 19566912 - 19567006
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||| |||||||| |||||||||| || |||| |||||| |||||||||||||||||||       ||||||||||| | |||||||||||    
T  19566912 aaaagttagcatattaaaatgataaacggtcgtataatacttcaatcacacttaatttattttagaaaaacatgttatatagtccgtaatttaaa 19567006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 34209617 - 34209560
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaattt 207  Q
    ||||||||||||||||||||||||||| ||||||||  ||||| ||||||||||||||    
T  34209617 aaaagttaacatattaacatgataaacaatcatataacacttcaatcacacttaattt 34209560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 39821819 - 39821714
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaa 252  Q
    ||||||||||||||||||||||| |||| |||| |||||  ||| |||||||||||||||       ||||||||| ||| | ||||||||| | |||||    
T  39821819 agttaacatattaacatgataaatgatcttataatacttaaatcgcacttaatttattttagaaaaacatgttatagaatccataatttaaaaatgaaaa 39821720  T
Q  253 gtaaac 258  Q
    ||||||    
T  39821719 gtaaac 39821714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 31795875 - 31795922
Alignment:
Q  165 aacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||    
T  31795875 aacatgataaacgatcatataatacttcaatcacacttaatttatttt 31795922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 27926706 - 27926671
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatata 185  Q
    ||||||||||||||||||||||||||||||||||||    
T  27926706 aaaagttaacatattaacatgataaacgatcatata 27926671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 8426975 - 8427024
Alignment:
Q  163 ttaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||| ||||||||| |||||| ||| |||||||||||||||    
T  8426975 ttaacatgataaatgatcatataatacttcaatcgcacttaatttatttt 8427024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 18811467 - 18811419
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||| |||||||| || ||| |||||||||||||||||||    
T  18811467 taacatgataaacaatcatataatatttcaatcacacttaatttatttt 18811419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 40022525 - 40022429
Alignment:
Q  150 aaaagttaacatatta--acatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||| |||||||||  | ||| ||||| |||||||| |||||| |||||||||||||||||||       ||||||||||| ||| |||||||||    
T  40022525 aaaagtaaacatattataatatgttaaacaatcatataatacttcaatcacacttaatttattttacaaaaacatgttatatagttcataatttaaa 40022429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 7681378 - 7681339
Alignment:
Q  173 aaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  7681378 aaacgatcatataatacttcaatcacacttaatttatttt 7681339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 28262534 - 28262642
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||| ||| ||||||||||||||||||| || || ||| ||||||  |||||||||||       ||||||||||| |   ||||||||| | ||    
T  28262534 aaaagttaatataataacatgataaacgatcatgtaatatttcaatcacatgtaatttattttagaaaaacatgttatatagtcaataatttaaaaaaga 28262633  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  28262634 aaagtaaac 28262642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 12751968 - 12751906
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||| |||| ||| ||| || ||||||||||||||| |||||| ||||||||||| |||||||    
T  12751968 aaaaattaatataataatataataaacgatcatataatacttcaatcacacttaaattatttt 12751906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 41778906 - 41778864
Alignment:
Q  170 gataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||| ||||||||| |||||| |||||||||||||||||||    
T  41778906 gataaatgatcatataatacttcaatcacacttaatttatttt 41778864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 35736330 - 35736297
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatca 197  Q
    |||||||||||||||||||||| |||||||||||    
T  35736330 taacatgataaacgatcatataatacttcgatca 35736297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 887051 - 887007
Alignment:
Q  168 atgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||| ||||||||| |||||| ||||||| |||||||||||    
T  887051 atgataaatgatcatataatacttcaatcacacataatttatttt 887007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 887254 - 887210
Alignment:
Q  165 aacatgataaacgatcatatagtacttcgatcacacttaatttat 209  Q
    ||||||||||||||||||||| |||||| ||||||| | ||||||    
T  887254 aacatgataaacgatcatataatacttcaatcacacatgatttat 887210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 244
Target Start/End: Complemental strand, 9427137 - 9427044
Alignment:
Q  151 aaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    ||||||| ||||||| |||||||||| | |||||| |||||| ||||| | ||||||| |||       ||||||||||| || ||||||||||    
T  9427137 aaagttagcatattagcatgataaacaaacatataatacttcaatcacgcataatttagttttgaaaaacatgttatatagttggtaatttaaa 9427044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 29525823 - 29525886
Alignment:
Q  151 aaagttaacatattaacatgataaacg--atcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||    || ||||| |||||| |||||| ||||||||||||    
T  29525823 aaagttaacatattaacatgataaaaagtattatataatacttcaatcacatttaatttatttt 29525886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 36046295 - 36046343
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcac 198  Q
    ||||||||||||||||||||| |||| ||||| ||| |||||| |||||    
T  36046295 aaaagttaacatattaacatgttaaatgatcacataatacttcaatcac 36046343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 13634864 - 13634756
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||       ||||||||||| | ||| ||||||| | ||    
T  13634864 aaaagttaacatattaacatgataaacgatcatataataattcaatcacacataatttattttagaaaaacatgttatatagtccgttatttaaaaaaga 13634765  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  13634764 aaagtaaac 13634756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 26415046 - 26414938
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    ||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| ||||||       ||||| ||||| | ||||||||||| | ||    
T  26415046 aaaagttaacatattaacatgataaacgaccatataatacttcaatcacacttaatatattttagaaaaacatgtcatatagtccgtaatttaaaaacga 26414947  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  26414946 aaagtaaac 26414938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 4373657 - 4373764
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||||||||| ||||||||| || ||| |||||||||||||||||||       | ||||||||| | ||||||||||| | ||    
T  4373657 aaaagttaacatattaacatgataaatgatcatataatatttcaatcacacttaatttatttttaaaaaacttgttatatagtccgtaatttaaaaaaga 4373756  T
Q  250 aaagtaaa 257  Q
    ||||||||    
T  4373757 aaagtaaa 4373764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 10072738 - 10072800
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  10072738 aaaagttaacatattaacatgataaacgatcatataatacttcaatcatacttaatttatttt 10072800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 36392241 - 36392303
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||    
T  36392241 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacacttaatctatttt 36392303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 37551560 - 37551498
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  37551560 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacacataatttatttt 37551498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 37654390 - 37654328
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||    
T  37654390 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacacataatttatttt 37654328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 28279567 - 28279676
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt-nnnnnnncatgttatataattcgtaatttaaagagg 248  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||||||||| ||||||||        ||||||||||| | | ||||||||| |||    
T  28279567 aaaagttaacatattaacatgataaatgatcatataatacttcaatcacacttagtttattttagaaaaaacatgttatatattccataatttaaaaagg 28279666  T
Q  249 aaaagtaaac 258  Q
    ||||||||||    
T  28279667 aaaagtaaac 28279676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 9857033 - 9856925
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||       ||||||||||| | | ||||||||| | ||    
T  9857033 aaaagttaacatattaacataataaacgatcatataatacttcaatcacacttgatttattttagaaaaacatgttatatagtccttaatttaaaaaaga 9856934  T
Q  250 aaagtaaac 258  Q
    ||| |||||    
T  9856933 aaactaaac 9856925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 37607047 - 37606985
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||    
T  37607047 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacatataatttatttt 37606985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 37779256 - 37779194
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||    
T  37779256 aaaagttaacatattaacatgataaacgatcatataatacttcaatcacatataatttatttt 37779194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 11757024 - 11756936
Alignment:
Q  156 taacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||||||||| ||||| ||||||||| |||||  |||||||||||||||||||       ||||||||||| |||||||||||||    
T  11757024 taacatattaacatcataaatgatcatataatactttaatcacacttaatttattttagagaaacatgttatatagttcgtaatttaaa 11756936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 7544289 - 7544195
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||| ||||||||||| |||||| |||||||| |||||| ||||||||| |||||||||       ||||||||||| | |||||||||||    
T  7544289 aaaagttagcatattaacataataaacaatcatataatacttcaatcacacttgatttattttagaaaaacatgttatatagtccgtaatttaaa 7544195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 20146957 - 20147013
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatt 206  Q
    ||||||||||||||||||||||||| |||||||||| || ||| |||||||||||||    
T  20146957 aaaagttaacatattaacatgataagcgatcatataatatttcaatcacacttaatt 20147013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 10476174 - 10476119
Alignment:
Q  157 aacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||| |||||||||||| ||||| |||||| |||||||||||||||||||    
T  10476174 aacatattaagatgataaacgattatataatacttcaatcacacttaatttatttt 10476119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 16938629 - 16938570
Alignment:
Q  153 agttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||| ||||||||||||| ||||||||| || ||| |||||||||||||||||||    
T  16938629 agttaacatgttaacatgataaatgatcatataatatttcaatcacacttaatttatttt 16938570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 17024315 - 17024377
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||| ||||||||||||| ||||||||||||| |||||| |||  ||||||||||||||    
T  17024315 aaaagttatcatattaacatgaaaaacgatcatataatacttcaatcgtacttaatttatttt 17024377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 20513536 - 20513602
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatag----tacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||| |||||||||||||||||||     |||||| |||||||||||||||||||    
T  20513536 aaaagttaacatattatcatgataaacgatcatatatataatacttcaatcacacttaatttatttt 20513602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 22023520 - 22023485
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatata 185  Q
    ||||||||||||||||||||||||||||||||||||    
T  22023520 aaaagttaacatattaacatgataaacgatcatata 22023485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 29002304 - 29002359
Alignment:
Q  157 aacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||||||||||||||| |||| | |||| | ||||||||||||    
T  29002304 aacatattaacatgataaacgatcatataatactacaatcatatttaatttatttt 29002359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 8502889 - 8502988
Alignment:
Q  113 tcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||| || ||||| |||||       ||||||||||| ||||| |||||| || || | ||| |||||| |||||||||||||||||||    
T  8502889 tcatttttaaattacggacattatgaaatattttttaaaaagttaacaaattaatatgatacacaattacataatacttcaatcacacttaatttatttt 8502988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 9798703 - 9798810
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||||| || || ||||||||| ||||||||||||| |||||| |||||| |||||||||||        |||||||||||||  ||||||| || | ||    
T  9798703 aaaagtcaatattttaacatgaaaaacgatcatataatacttcaatcacaattaatttatttaagaaaaacatgttatataatctgtaattttaaaaaga 9798802  T
Q  250 aaagtaaa 257  Q
    ||||||||    
T  9798803 aaagtaaa 9798810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 16501881 - 16501943
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||||||||||| ||||| |||||||||  ||||  ||||||||| |||||||||    
T  16501881 aaaagttaacatattaacataataaatgatcatataaaactttaatcacacttgatttatttt 16501943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 14681612 - 14681528
Alignment:
Q  160 atattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaa 244  Q
    |||||||||||||||||  ||||||| | |||| |||||| ||||||||||||       |||||||||||||  ||||||||||    
T  14681612 atattaacatgataaacagtcatatattccttcaatcacatttaatttattttaaaaaaacatgttatataatctgtaatttaaa 14681528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 36363222 - 36363077
Alignment:
Q  113 tcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||| |||| ||||||||         ||||||||||||||| |||||||||| || |||||  ||||| || |||||| |||||||||    
T  36363222 tcatttttaaattacggatactataaaatgtcttttagaaagttaacatattagcatgataaacaatgatataaaacttcaatgacacttgatttatttt 36363123  T
Q  213 nnnnnnncatgttatataattcgtaatttaaagaggaaaagtaaac 258  Q
           ||||||||||| | |||| |||||| | ||||| |||||    
T  36363122 agaaaaacatgttatatagtacgtagtttaaacaagaaaattaaac 36363077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 20409795 - 20409750
Alignment:
Q  167 catgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||||| |||||||  ||||||||||||| |||||    
T  20409795 catgataaacgatcataaagtacttaaatcacacttaattcatttt 20409750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 2550459 - 2550503
Alignment:
Q  166 acatgataaacgatcatatagtacttcgatcacacttaatttatt 210  Q
    ||||||||||| |||||||| |||||| ||||||| |||||||||    
T  2550459 acatgataaacaatcatataatacttcaatcacacgtaatttatt 2550503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 16391 - 16495
Alignment:
Q  154 gttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagaggaaaag 253  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||       ||||||||||| | ||| | ||||| | ||||||    
T  16391 gttaacatattaacatgataaacaatcatataatacttcaatcacacttaatttattttagacaaacatgttatatagtccgtgagttaaaaacgaaaag 16490  T
Q  254 taaac 258  Q
    |||||    
T  16491 taaac 16495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 39278 - 39389
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagta---cttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaaga 246  Q
    |||||||||||||||||||||||||| ||||||||| ||   |||| |||||||||||||||||||       ||||||| ||| | ||||||||||| |    
T  39278 aaaagttaacatattaacatgataaatgatcatataatacttcttcaatcacacttaatttattttagaaaaacatgttacatagtccgtaatttaaaaa 39377  T
Q  247 ggaaaagtaaac 258  Q
     |||||||||||    
T  39378 agaaaagtaaac 39389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 15409 - 15354
Alignment:
Q  157 aacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||| |||||||| |||||||| |||||| | |||||||||||||||||    
T  15409 aacatattaacgtgataaacaatcatataatacttcaaccacacttaatttatttt 15354  T

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Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 258
Target Start/End: Complemental strand, 16140 - 15995
Alignment:
Q  113 tcatttttaaattacagatattataaaatannnnnnnaaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||||||||||| |||||||| ||||        ||||||||||||||||| |||| |||| || ||| | |||||| ||||||| |||||| ||||    
T  16140 tcatttttaaattacggatattatgaaatgttttttaaaaagttaacatattaatatgaaaaacaattataaaatacttcaatcacacataatttttttt 16041  T
Q  213 nnnnnnncatgttatataattcgtaatttaaagaggaaaagtaaac 258  Q
           ||||||||||| |  |||||||||| | |||||||||||    
T  16040 aaaaaaacatgttatatagtctgtaatttaaaaaagaaaagtaaac 15995  T

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Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 150 - 258
Target Start/End: Complemental strand, 6736 - 6629
Alignment:
Q  150 aaaagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttattttnnnnnnncatgttatataattcgtaatttaaagagga 249  Q
    |||| |||| |||||||||| ||||||||||||||| |||||| |||||||| ||||||||||       || |||||||| |  |||||||||| | ||    
T  6736 aaaaattaaaatattaacat-ataaacgatcatataatacttcaatcacactaaatttattttagaataacaagttatatagtctgtaatttaaaaaaga 6638  T
Q  250 aaagtaaac 258  Q
    |||||||||    
T  6637 aaagtaaac 6629  T

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Target: scaffold0341 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 18920 - 18861
Alignment:
Q  152 aagttaacatattaacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    ||||||| |||||||||||||||| ||||||||| || ||| || |||| |||||||||||    
T  18920 aagttaatatattaacatgataaa-gatcatataataattcaatgacacataatttatttt 18861  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 81516 - 81564
Alignment:
Q  164 taacatgataaacgatcatatagtacttcgatcacacttaatttatttt 212  Q
    |||||||||||| ||||||||| |||||| |||| |||| |||||||||    
T  81516 taacatgataaatgatcatataatacttcaatcatacttgatttatttt 81564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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