View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_80 (Length: 251)
Name: NF0526_low_80
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 31705083 - 31704850
Alignment:
| Q |
13 |
aatatcggtatttttgttaattgagttgggttttatggacaaaattggtagttcttaattaaagttgttttgtacttttgttattaatatatagatatag |
112 |
Q |
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| T |
31705083 |
aatatcggtattt--gttaattgagttgggttttatggacaaaattggtagttcttaattaaagttgttttgtacttttgttattaatatatagatatag |
31704986 |
T |
|
| Q |
113 |
attgagcagaaatgataacattaacacagtaatgaaagcccacaaatactattttcaagcagctcaacatataaagataaatatcattatgctcctaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31704985 |
attgagcagaaatgataacattaacacagtaatgaaagcccacaaatactattttcaagcagctcaacatataaagataaatatcattatgctcctaaac |
31704886 |
T |
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| Q |
213 |
aaaaagatcttataatatagatacttagattaacca |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31704885 |
aaaaagatcttataatatagatacttagattaacca |
31704850 |
T |
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