View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0526_low_83 (Length: 251)
Name: NF0526_low_83
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_83 |
 | |
|
| [»] scaffold0700 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 36747320 - 36747099
Alignment:
| Q |
1 |
aattatttacttggtaatcgtattaaaaaattgactgttagattgaaacgtattataacatatatcatttctataaaatttgacattaattaaaaatcat |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36747320 |
aattctttacttggtaatcgtattaaaaaattgactgttagattgaaacatattataacatatatcatttctataaaatttgatattaattaaaaatcat |
36747221 |
T |
|
| Q |
101 |
tacaaatgataaatgatttctaatgattttaaattttgatgnnnnnnnagtccgaggaagacataagctaagctcaaaaatgtgtcttgtcaatcaaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36747220 |
tacaaatgataaatgatttctaatgatttttaattttgatgtttttttagtccgaggaagacataagctaagctcaaaaatgtgtcttgtcaatcaaacc |
36747121 |
T |
|
| Q |
201 |
ctaagaatatgtcatttcatat |
222 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
36747120 |
ctaataatatgtcatttcatat |
36747099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Complemental strand, 41800075 - 41800015
Alignment:
| Q |
36 |
tgttagattgaaacgtattataacatatatcatttctataaaatttgacattaattaaaaa |
96 |
Q |
| |
|
|||| |||||||| |||||||||||| ||||| |||| ||||||| |||||||| ||||| |
|
|
| T |
41800075 |
tgtttgattgaaatatattataacataaatcatatctacaaaattttacattaatcaaaaa |
41800015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 38186776 - 38186708
Alignment:
| Q |
15 |
taatcgtattaaaaaattgactgttagattgaaacgtattataacatatatcatttctataaaatttga |
83 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
38186776 |
taatggtattacaaaattgactgttgaattgaaaggtattataacatagatcatatctataaaatttga |
38186708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 29141940 - 29142023
Alignment:
| Q |
20 |
gtattaaaaaattgactgttagattgaaacgtattataacata--tatcatttctataaaatttgacattaattaaaaatcatt |
101 |
Q |
| |
|
|||||| ||||| || |||| |||||||| |||||||| ||| | |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
29141940 |
gtattataaaatcgattgttggattgaaaaatattataatatagctctcatctatataaaatttgacattaattaaaaatcatt |
29142023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0700 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0700
Description:
Target: scaffold0700; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 5144 - 5219
Alignment:
| Q |
22 |
attaaaaaattgactgttagattgaaacgtattataacatatatcatttctataaaatttgacattaattaaaaat |
97 |
Q |
| |
|
||||||||||| | ||| |||||||| |||||||||||| ||||| |||||||| |||||||||||| |||||| |
|
|
| T |
5144 |
attaaaaaattaaacgttggattgaaagctattataacatagatcatgtctataaagtttgacattaataaaaaat |
5219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 38947521 - 38947589
Alignment:
| Q |
21 |
tattaaaaaattgactgttagattgaaacgtattataacatatatcatttctataaaatttgacattaa |
89 |
Q |
| |
|
||||| ||||||||||||| |||||||| ||||| |||||| ||||| | |||||||||| ||||||| |
|
|
| T |
38947521 |
tattacaaaattgactgttggattgaaagatattaaaacatagatcatgtgtataaaattttacattaa |
38947589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 28117191 - 28117254
Alignment:
| Q |
20 |
gtattaaaaaattgactgttagattgaaacgtattataacatatatcatttctataaaatttga |
83 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||||||| ||||| | |||||||||||| |
|
|
| T |
28117191 |
gtattaagaaattgactgttagatcaaaaaatattataacatagatcatgtatataaaatttga |
28117254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 3920829 - 3920769
Alignment:
| Q |
41 |
gattgaaacgtattataacatatatcatttctataaaatttgacattaattaaaaatcatt |
101 |
Q |
| |
|
|||||||| |||||||| ||| ||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
3920829 |
gattgaaagatattataatatagatcatatctattacatttgacattaattaaaaatcatt |
3920769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 238 times since January 2019
Visitors: 3648