View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0526_low_86 (Length: 248)
Name: NF0526_low_86
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_86 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 3776714 - 3776930
Alignment:
| Q |
15 |
aggaggagcacagagtgaaataggaag-tggaggagagaacacaaaggggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggt |
113 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3776714 |
aggaggagcacaaagtgaaataggaaggtggaggagagaacacgaaggggggaagagaaccggtggccgtgagatagagagaaagacgtcggtaggtggt |
3776813 |
T |
|
| Q |
114 |
ggatggggtgagagaggcacgaagacagcaggttgtggccggatgccggcggaggtatggtggagaaagaggagaggaaaagggtgagtggctgggagtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3776814 |
ggatggggtgagagaggcacgaagacggcaggttgtggccgtatgccggcggaggtatggtggagaaagaggagaggaaaagggtgagtggctgggagtc |
3776913 |
T |
|
| Q |
214 |
agagtggggttaggttg |
230 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
3776914 |
agagtggggttacgttg |
3776930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 42434860 - 42435076
Alignment:
| Q |
15 |
aggaggagcacagagtgaaataggaag-tggaggagagaacacaaaggggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggt |
113 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
42434860 |
aggaggagcacagaatgaaataggaaggtggaggagagaacacgaaggggggaagagaaccggtggccgtgagatagagaaaaagacgtcggtaggtggt |
42434959 |
T |
|
| Q |
114 |
ggatggggtgagagaggcacgaagacagcaggttgtggccggatgccggcggaggtatggtggagaaagaggagaggaaaagggtgagtggctgggagtg |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42434960 |
ggatggggtgagagaggcatgaagacagcaggtggtggccggatgccggcagagacatggtggagaaagaggagaggaaaagggtgagtggctgggagtg |
42435059 |
T |
|
| Q |
214 |
agagtggggttaggttg |
230 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
42435060 |
agagtggggttacgttg |
42435076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 5830383 - 5830458
Alignment:
| Q |
61 |
gggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggtggatggggtgagagaggcacgaa |
136 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
5830383 |
gggggaagagaaccggtgtccgtgagatagagagaaagatgtcggttggtggtggatggggtgagagagggacgaa |
5830458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 9618414 - 9618488
Alignment:
| Q |
62 |
ggggaagagaaccggtggccgtgagatagagagaaagacgtcgataggtggtggatggggtgagagaggcacgaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
9618414 |
ggggaagagaaccggtggccgtgagatagagagaaagatgtcggttggtggtggatggggtgagagagggacgaa |
9618488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 686 times since January 2019
Visitors: 3655