View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_88 (Length: 245)
Name: NF0526_low_88
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_88 |
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Alignment Details
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 14663354 - 14663321
Alignment:
| Q |
23 |
catcttcttcctcttttcccttaaccaaatcaaa |
56 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
14663354 |
catcttcttcctcttttcccttaaccaaatcaaa |
14663321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 214
Target Start/End: Complemental strand, 14663168 - 14663137
Alignment:
| Q |
183 |
atcgatctcaggtatctcaattcctatcctat |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
14663168 |
atcgatctcaggtatctcaattcctatcctat |
14663137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 14663289 - 14663253
Alignment:
| Q |
74 |
gattacttgatccttccagcaagctatgaccatgttc |
110 |
Q |
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|||||||||||||||||| |||||||| ||||||||| |
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|
| T |
14663289 |
gattacttgatccttccatcaagctattaccatgttc |
14663253 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 5079959 - 5079992
Alignment:
| Q |
23 |
catcttcttcctcttttcccttaaccaaatcaaa |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5079959 |
catcttcttcctcttttcccttaaccaaatcaaa |
5079992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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