View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_9 (Length: 576)
Name: NF0526_low_9
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 110 - 463
Target Start/End: Complemental strand, 45064037 - 45063685
Alignment:
| Q |
110 |
atcaaaacatgttatacgagcaatatacatttttaaattaaatgatttaaaattggacggaatgattaattttatttnnnnnnnnnnnnncgggagactc |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||| |
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| T |
45064037 |
atcaaaacatgttatatgagcaatatacatttttaaattaaatcatttaaaattggacggaatgattaatttaatttaaaaaacaaaaa-cgggagcctc |
45063939 |
T |
|
| Q |
210 |
gtgaatggttggctattggttcgcttaacctgctgttcatttaaattattttttaatcgaagtgcaaatgacatccataacataactgccaatgggtcct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45063938 |
gtgaatggttggctattggttcgcttaacctgctgttcatttaaatgattttttaatcgaagtgcaaatgacatccataacataactgccaatgggtcct |
45063839 |
T |
|
| Q |
310 |
tgaccgttaaaaaggcctaactttttccccaaaatgacatcatatgatatatcacacagtgtgggacataccccacaattgccaaactgcccatgatcgt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45063838 |
tgaccgttaaaaaggcctaactttttccccaaaatgacatcatatgatatatcacacagtgtgggacataccccacaattgccaaattgcccatgatcgt |
45063739 |
T |
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| Q |
410 |
caggtgctgccaacggaaaccggcaagtggtaaccatttacacgtttatttcat |
463 |
Q |
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| T |
45063738 |
caggtgctgccaacggaaaccggcaagtggtaacccattacacgtttatttcat |
45063685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 4701129 - 4701181
Alignment:
| Q |
110 |
atcaaaacatgttatacgagcaatatacatttttaaattaaatgatttaaaat |
162 |
Q |
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|||||||||||||||| || ||| |||||||||||| ||||| ||||||||| |
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| T |
4701129 |
atcaaaacatgttatatgaataatgtacatttttaaagtaaatcatttaaaat |
4701181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 21941157 - 21941189
Alignment:
| Q |
28 |
atcaggtcttaaatgtttaagaccctcccattg |
60 |
Q |
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| T |
21941157 |
atcaggtcttaaatgtttaagaccctcccattg |
21941189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 61
Target Start/End: Original strand, 6794138 - 6794169
Alignment:
| Q |
30 |
caggtcttaaatgtttaagaccctcccattgt |
61 |
Q |
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| T |
6794138 |
caggtcttaaatgtttaagaccctcccattgt |
6794169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 28540569 - 28540535
Alignment:
| Q |
28 |
atcaggtcttaaatgtttaagaccctcccattgta |
62 |
Q |
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||||||||||||||||| ||||||||||||||||| |
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|
| T |
28540569 |
atcaggtcttaaatgttgaagaccctcccattgta |
28540535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 35468227 - 35468199
Alignment:
| Q |
32 |
ggtcttaaatgtttaagaccctcccattg |
60 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
35468227 |
ggtcttaaatgtttaagaccctcccattg |
35468199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 23624698 - 23624665
Alignment:
| Q |
28 |
atcaggtcttaaatgtttaagaccctcccattgt |
61 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
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| T |
23624698 |
atcaggtcttaaatgtttaagactctcccattgt |
23624665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 15468354 - 15468386
Alignment:
| Q |
28 |
atcaggtcttaaatgtttaagaccctcccattg |
60 |
Q |
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|
||||||||||||||||| ||||||||||||||| |
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|
| T |
15468354 |
atcaggtcttaaatgttgaagaccctcccattg |
15468386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 11921838 - 11921810
Alignment:
| Q |
32 |
ggtcttaaatgtttaagaccctcccattg |
60 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
11921838 |
ggtcttaaatgtttaagaccctcccattg |
11921810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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