View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0526_low_90 (Length: 244)
Name: NF0526_low_90
Description: NF0526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0526_low_90 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 39059842 - 39059625
Alignment:
| Q |
25 |
tatacatgtacactcaaagggaattgaaggaaaggagggatgtgcatatcgatagaagggttatacttttcgatgattaagtagagtaactaggtagaaa |
124 |
Q |
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| T |
39059842 |
tatacatgtacactcaaagggaattgaaggaaaggagggatgtgcatatcgatagaagggttatacttttcgatgattaagtagagtaactaggtagaaa |
39059743 |
T |
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| Q |
125 |
aatgttgtgttttagctaacatcgatctactaaattgaagtatggagaactaaagtctttcgagcaaaagaatnnnnnnnnnnnttggtggttccattat |
224 |
Q |
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| T |
39059742 |
aatgttgtgttttagctaacatcgatctactaaattgaagtatggagaactaaagtctttcgagcaaaagaat--aaaaaaaaattggttgttccattat |
39059645 |
T |
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| Q |
225 |
cggatgatgtaaagactttt |
244 |
Q |
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| T |
39059644 |
cggatgatgtaaagactttt |
39059625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 15174779 - 15174824
Alignment:
| Q |
91 |
ttttcgatgattaagtagagtaactaggtagaaaaatgttgtgttt |
136 |
Q |
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| T |
15174779 |
ttttcaatgattaagtagagaaattaggtagaaaaaggttgtgttt |
15174824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 16380818 - 16380777
Alignment:
| Q |
101 |
ttaagtagagtaactaggtagaaaaatgttgtgttttagcta |
142 |
Q |
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| T |
16380818 |
ttaagtagattaagtaggtagaaaaaggttgtgttttagcta |
16380777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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