View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0527_high_6 (Length: 261)
Name: NF0527_high_6
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0527_high_6 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 29 - 261
Target Start/End: Complemental strand, 44611307 - 44611075
Alignment:
| Q |
29 |
agtatactctcaagaacacacacaccaaataaatataaagaacaggtagtgcacgaggccaatccgtacagcaccatttgcacaatgtttccaagttgct |
128 |
Q |
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| T |
44611307 |
agtatactctcaagaacacacacaccaaataaatataaagaacaggtagtgcacgaggccaatctgtacaacaccatttgcacgatgtttccaagttgct |
44611208 |
T |
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| Q |
129 |
tcctgatattcaatatttttcacgaaattgtacaatttcgtttgaaagtacgttgcacatgcacatgtaggttcaaattgcttgctttatttcaatcaaa |
228 |
Q |
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| T |
44611207 |
tcctgatattcaatatttttcacgaaattgtacaatttcgtttgaaagtacgttgcacatgcacaggtaggttcaaattgcttgctttatttccatcaaa |
44611108 |
T |
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| Q |
229 |
tttgaagtcataatgtgaagtgggggcgtttgt |
261 |
Q |
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| T |
44611107 |
tttgaagtcataatgtgaagtgggggcgtttgt |
44611075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 44144465 - 44144247
Alignment:
| Q |
29 |
agtatactctcaagaacacacacac-caaataaatataaagaacaggtagtgcacgaggccaatccgtacagcaccatttgcacaatgtttccaagttgc |
127 |
Q |
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| T |
44144465 |
agtatactctcaagaaaaaccgcacacaaataaatataaagaacaggtagtgcttgaggttggtccgtacaacatcatttgcacaacgtttccaagttgc |
44144366 |
T |
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| Q |
128 |
ttcctgatattcaatatttttcacgaaattgtacaatttcgtttgaaagtacgttgcacatgcacatgtaggttcaaattgcttgctttatttcaatcaa |
227 |
Q |
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| T |
44144365 |
ttcctgatattcaatatttttcacaaaattgtacaattttgtttgaaggtacattgcatatgtac----aggctctaattgcttgcattatttccgtcaa |
44144270 |
T |
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| Q |
228 |
atttgaagtcataatgtgaagtg |
250 |
Q |
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| T |
44144269 |
atttaaagtcatgttgtgaagtg |
44144247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 173420 - 173219
Alignment:
| Q |
29 |
agtatactctcaagaacacacacac-caaataaatataaagaacaggtagtgcacgaggccaatccgtacagcaccatttgcacaatgtttccaagttgc |
127 |
Q |
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| T |
173420 |
agtatactctcaagaacacacacacataaataaatataaagaa---------catgagatcgacccgtacaacaccatttgcgcgatgtttccacgttgc |
173330 |
T |
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| Q |
128 |
ttcctgatattcaatatttttcacgaaattgtacaatttcgtttgaaagtacgttgcacatgcacatgtaggttcaaattgcttgctttatttcaatcaa |
227 |
Q |
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| T |
173329 |
ttcctgat--------tttgtcacgaaattgtacaattttgtttgatggtacattgcatatgtacat----gttcaaattgcttgcattatttccatcaa |
173242 |
T |
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| Q |
228 |
atttgaagtcataatgtgaagtg |
250 |
Q |
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| T |
173241 |
atttgaagtcataatgtgaagtg |
173219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 34005937 - 34005890
Alignment:
| Q |
132 |
tgatattcaatatttttcacgaaattgtacaatttcgtttgaaagtac |
179 |
Q |
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| T |
34005937 |
tgatattcaatatttttcacaaaattgtacaattttgtttgaaggtac |
34005890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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