View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0527_low_11 (Length: 380)

Name: NF0527_low_11
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0527_low_11
NF0527_low_11
[»] chr3 (8 HSPs)
chr3 (217-357)||(21966614-21966753)
chr3 (217-357)||(21989050-21989189)
chr3 (217-348)||(21966963-21967094)
chr3 (217-348)||(21989399-21989530)
chr3 (29-134)||(24047127-24047234)
chr3 (29-134)||(23674851-23674958)
chr3 (29-134)||(23679356-23679463)
chr3 (29-134)||(24051593-24051700)
[»] chr6 (2 HSPs)
chr6 (217-348)||(20487184-20487315)
chr6 (217-348)||(20481688-20481819)
[»] chr8 (3 HSPs)
chr8 (29-134)||(24859182-24859289)
chr8 (217-343)||(24858989-24859115)
chr8 (217-348)||(24860149-24860280)
[»] chr5 (2 HSPs)
chr5 (29-134)||(27205730-27205837)
chr5 (29-130)||(27210195-27210298)
[»] chr4 (2 HSPs)
chr4 (29-134)||(26897317-26897424)
chr4 (29-134)||(26901779-26901886)
[»] chr1 (2 HSPs)
chr1 (29-134)||(26406737-26406844)
chr1 (29-134)||(26411203-26411310)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 217 - 357
Target Start/End: Original strand, 21966614 - 21966753
Alignment:
Q  217 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 316  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  21966614 ttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaatg-taagt 21966712  T
Q  317 ctcacacatggtcgttgatgtggcgcttatggtcgctgatg 357  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  21966713 ctcacacatggtcgctgatgtggcgcttatggtcgctgatg 21966753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 217 - 357
Target Start/End: Original strand, 21989050 - 21989189
Alignment:
Q  217 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 316  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  21989050 ttggtcctttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaatg-taagt 21989148  T
Q  317 ctcacacatggtcgttgatgtggcgcttatggtcgctgatg 357  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  21989149 ctcacacatggtcgctgatgtggcgcttatggtcgctgatg 21989189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 217 - 348
Target Start/End: Complemental strand, 21967094 - 21966963
Alignment:
Q  217 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 316  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  21967094 ttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagt 21966995  T
Q  317 ctcacacatggtcgttgatgtggcgcttatgg 348  Q
    |||||||||||||| |||||||||||||||||    
T  21966994 ctcacacatggtcgctgatgtggcgcttatgg 21966963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 217 - 348
Target Start/End: Complemental strand, 21989530 - 21989399
Alignment:
Q  217 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 316  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  21989530 ttggtcccttaattaatttaagtttcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaacattaattaagaaacgttaagt 21989431  T
Q  317 ctcacacatggtcgttgatgtggcgcttatgg 348  Q
    |||||||||||||| |||||||||||||||||    
T  21989430 ctcacacatggtcgctgatgtggcgcttatgg 21989399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 24047234 - 24047127
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  |||||||||||||| ||    
T  24047234 atactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcaccaca 24047135  T
Q  127 tactgctt 134  Q
    ||||||||    
T  24047134 tactgctt 24047127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 23674958 - 23674851
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  |||||||||||||| ||    
T  23674958 atactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcaccaca 23674859  T
Q  127 tactgctt 134  Q
    ||||||||    
T  23674858 tactgctt 23674851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 23679463 - 23679356
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  |||||||||||||| ||    
T  23679463 atactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcaccaca 23679364  T
Q  127 tactgctt 134  Q
    ||||||||    
T  23679363 tactgctt 23679356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 24051700 - 24051593
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  |||||||||||||| ||    
T  24051700 atactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcaccaca 24051601  T
Q  127 tactgctt 134  Q
    ||||||||    
T  24051600 tactgctt 24051593  T

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Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 217 - 348
Target Start/End: Complemental strand, 20487315 - 20487184
Alignment:
Q  217 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 316  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||||    
T  20487315 ttggtcccttaattaattttagtctcattttggtcctttaattaagatccgtccatcgtttatgtcctttccgtcaaactttaattaagaaacgttaagt 20487216  T
Q  317 ctcacacatggtcgttgatgtggcgcttatgg 348  Q
    |||||||||||||| |||||||||||||||||    
T  20487215 ctcacacatggtcgctgatgtggcgcttatgg 20487184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 20481688 - 20481819
Alignment:
Q  217 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 316  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | |||||    
T  20481688 ttggtcccttatttaattttagtctcattttggtcctttaattaagattcgtccatcgtttatgtcctttccgtcaaactttaattaagaaacgctaagt 20481787  T
Q  317 ctcacacatggtcgttgatgtggcgcttatgg 348  Q
    |||||||||||| | |||||||||||||||||    
T  20481788 ctcacacatggttgctgatgtggcgcttatgg 20481819  T

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Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 24859289 - 24859182
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  |||||||||||||||||    
T  24859289 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcaccgca 24859190  T
Q  127 tactgctt 134  Q
    ||||||||    
T  24859189 tactgctt 24859182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 217 - 343
Target Start/End: Original strand, 24858989 - 24859115
Alignment:
Q  217 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 316  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||| ||| |||| ||| ||| ||| |||||||||||||||||    
T  24858989 ttggtcccttaattatttttaggttcattttggtcctttaattaagctccgtccatcgtttttgttctttccgttaaaaatttattaagaaatgttaagt 24859088  T
Q  317 ctcacacatggtcgttgatgtggcgct 343  Q
    ||||||||||| || ||||||||||||    
T  24859089 ctcacacatgggcgctgatgtggcgct 24859115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 217 - 348
Target Start/End: Complemental strand, 24860280 - 24860149
Alignment:
Q  217 ttggtcccttaattaattttagtttcattttggtcctttaattaagattcgtccatcgtttatgtccttttcgtcaaacattaattaagaaatgttaagt 316  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||| | ||||||||||||||| ||||| |||||||  ||||||  |||| |||||||    
T  24860280 ttggtcccttaattatttttagactcattttggtcctttaattaagctccgtccatcgtttatgccctttccgtcaaattttaattttgaaacgttaagt 24860181  T
Q  317 ctcacacatggtcgttgatgtggcgcttatgg 348  Q
    |||||| ||||||| |||||||||||||||||    
T  24860180 ctcacatatggtcgctgatgtggcgcttatgg 24860149  T

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Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 27205730 - 27205837
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  |||||||||||||| ||    
T  27205730 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcaccaca 27205829  T
Q  127 tactgctt 134  Q
    ||||||||    
T  27205830 tactgctt 27205837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 27210195 - 27210298
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  |||||||||||||| ||    
T  27210195 atactattgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcaccaca 27210294  T
Q  127 tact 130  Q
    ||||    
T  27210295 tact 27210298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 26897317 - 26897424
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  |||||||||||||| ||    
T  26897317 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcaccaca 26897416  T
Q  127 tactgctt 134  Q
    ||||||||    
T  26897417 tactgctt 26897424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 26901779 - 26901886
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  |||||||||||||| ||    
T  26901779 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaacattgaagaaaaactgattttgttgaattcaccaca 26901878  T
Q  127 tactgctt 134  Q
    ||||||||    
T  26901879 tactgctt 26901886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 26406844 - 26406737
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  |||||||||||||| ||    
T  26406844 atactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcaccaca 26406745  T
Q  127 tactgctt 134  Q
    ||||||||    
T  26406744 tactgctt 26406737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 26411310 - 26411203
Alignment:
Q  29 atactgttgcaggattttgagtggaaacgtgactttttatactatacttccactgatggatgaacattgaagaaaaactaa--ttgttgaattcaccgca 126  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |  |||||||||||||| ||    
T  26411310 atactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatgaacattgaataaaaactgattttgttgaattcaccaca 26411211  T
Q  127 tactgctt 134  Q
    ||||||||    
T  26411210 tactgctt 26411203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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