View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0527_low_12 (Length: 366)

Name: NF0527_low_12
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0527_low_12
NF0527_low_12
[»] chr8 (2 HSPs)
chr8 (88-270)||(11063302-11063484)
chr8 (156-202)||(28431383-28431429)
[»] chr5 (4 HSPs)
chr5 (158-262)||(17890717-17890821)
chr5 (159-243)||(42910450-42910534)
chr5 (170-217)||(40516775-40516822)
chr5 (176-216)||(19192067-19192107)
[»] chr1 (3 HSPs)
chr1 (174-261)||(5276945-5277032)
chr1 (156-216)||(34634146-34634206)
chr1 (204-260)||(44167589-44167645)
[»] chr4 (2 HSPs)
chr4 (127-269)||(32028192-32028334)
chr4 (125-262)||(33290860-33290997)
[»] chr2 (2 HSPs)
chr2 (123-262)||(12702846-12702986)
chr2 (167-220)||(5296842-5296895)
[»] chr7 (5 HSPs)
chr7 (178-244)||(23822869-23822935)
chr7 (156-194)||(36522526-36522564)
chr7 (138-174)||(26526614-26526650)
chr7 (129-216)||(36729542-36729629)
chr7 (227-263)||(44426043-44426079)
[»] chr6 (6 HSPs)
chr6 (129-237)||(32695412-32695520)
chr6 (178-261)||(30808440-30808523)
chr6 (167-262)||(33944756-33944851)
chr6 (129-244)||(32234436-32234553)
chr6 (228-262)||(34197875-34197909)
chr6 (210-262)||(32234500-32234552)
[»] chr3 (5 HSPs)
chr3 (180-242)||(810771-810833)
chr3 (176-243)||(23944565-23944632)
chr3 (167-248)||(14222651-14222732)
chr3 (227-264)||(31215818-31215855)
chr3 (167-219)||(27664089-27664141)
[»] scaffold0020 (1 HSPs)
scaffold0020 (156-208)||(172515-172567)
[»] scaffold0045 (1 HSPs)
scaffold0045 (194-261)||(58600-58667)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 88 - 270
Target Start/End: Original strand, 11063302 - 11063484
Alignment:
Q  88 aaccattaggaaatagatttagttatgattataagttagcatatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaa 187  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11063302 aaccattaggaaatagatttacttatgattataagttagcatatgtttggtatcatggtgagtatataagaatcacgacgatccaccataattttttaaa 11063401  T
Q  188 agttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaacatgtacttag 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||    
T  11063402 agttacactttatagtttctataaaatcatgatggattaccgtgattctgacctatccaccgtgatatgaaacatgtacttag 11063484  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 28431383 - 28431429
Alignment:
Q  156 agaatcacgacgatccaccatgattttttaaaagttacactttatag 202  Q
    ||||| || ||||||||||||||||||| ||||| ||||||||||||    
T  28431383 agaataacaacgatccaccatgatttttcaaaagctacactttatag 28431429  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 17890821 - 17890717
Alignment:
Q  158 aatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatca 257  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||||| | ||||||||   ||||| ||||||||||||||||| ||||  ||||| ||    
T  17890821 aatcatgacgatccatcgtgattttttaaaagttacactttatagtttatgtaaaatcacagtggatcaccgtgattctgacatacccacggtgatacca 17890722  T
Q  258 aacat 262  Q
    |||||    
T  17890721 aacat 17890717  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 42910534 - 42910450
Alignment:
Q  159 atcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatat 243  Q
    |||||||||||||||| |||||||| ||||| | |||||| ||| ||||| |||||||  |||||| ||||||||| || |||||    
T  42910534 atcacgacgatccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcacaatggatcaccgtgattttggcatat 42910450  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 40516775 - 40516822
Alignment:
Q  170 ccaccatgattttttaaaagttacactttatagtttctataaaatcat 217  Q
    |||||||||||||| ||||| |||||||| ||| ||||||||||||||    
T  40516775 ccaccatgatttttcaaaagctacactttgtagcttctataaaatcat 40516822  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 19192067 - 19192107
Alignment:
Q  176 tgattttttaaaagttacactttatagtttctataaaatca 216  Q
    ||||||||||||||||| |||||||||||| | ||||||||    
T  19192067 tgattttttaaaagttatactttatagtttttgtaaaatca 19192107  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 5277032 - 5276945
Alignment:
Q  174 catgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaaca 261  Q
    |||||||||| ||||  |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||  ||||| ||||||    
T  5277032 catgatttttcaaaaaatacactttgtagtttctacaaaatcatgatggatcaccgtgattctgacatatccactgtgataccaaaca 5276945  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 34634146 - 34634206
Alignment:
Q  156 agaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatca 216  Q
    |||||||| |||||||||| | |||||||||||  ||| | |||||||||||| |||||||    
T  34634146 agaatcacaacgatccaccgtaattttttaaaatctacgccttatagtttctacaaaatca 34634206  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 44167589 - 44167645
Alignment:
Q  204 ttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaac 260  Q
    ||||| ||||| ||||||||| |||||||||||||||||  | | ||||||||||||    
T  44167589 ttctacaaaattatgatggatcaccgtgattctgacatactctctttgatatcaaac 44167645  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 127 - 269
Target Start/End: Original strand, 32028192 - 32028334
Alignment:
Q  127 catatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggatta 226  Q
    |||||||||||||||| |||   ||| | |||||||||| ||||||| ||||||||| ||||| |||||||||||| || |  ||||||| | || || |    
T  32028192 catatgtttggtatcacggtagatatgtcagaatcacgatgatccactatgatttttcaaaagctacactttatagcttatgcaaaatcacggtgaatca 32028291  T
Q  227 ccgtgattctgacatatccaccttgatatcaaacatgtactta 269  Q
    | ||||||| ||||| |||||| ||||| |||||||| |||||    
T  32028292 ctgtgattcagacatctccaccgtgataccaaacatgcactta 32028334  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 262
Target Start/End: Complemental strand, 33290997 - 33290860
Alignment:
Q  125 agcatatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggat 224  Q
    |||||||||||| ||||| |||| || | | | ||||||||||||||||  ||| |||| ||||||| |||| | ||| || |  ||||||| | ||| |    
T  33290997 agcatatgtttgatatcacggtgggtgtgtcaaaatcacgacgatccactgtgaattttcaaaagtttcactctctagcttatgcaaaatcacggtgggt 33290898  T
Q  225 taccgtgattctgacatatccaccttgatatcaaacat 262  Q
    || |||||||||  || ||||||| |||||||||||||    
T  33290897 tatcgtgattctagcacatccaccgtgatatcaaacat 33290860  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 262
Target Start/End: Original strand, 12702846 - 12702986
Alignment:
Q  123 ttagcatatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagt-tacactttatagtttctataaaatcatgatg 221  Q
    |||||||||||||||  ||| ||||  ||||| | |||||||| || |||| |||||||| ||||||  |||||||| ||||||||  ||||||||||||    
T  12702846 ttagcatatgtttggcttcacggtggatatatcataatcacgatgacccacaatgattttgtaaaaggctacactttgtagtttctgcaaaatcatgatg 12702945  T
Q  222 gattaccgtgattctgacatatccaccttgatatcaaacat 262  Q
      | ||||||||||| | ||||||||| | ||| |||||||    
T  12702946 agtcaccgtgattcttagatatccaccataataccaaacat 12702986  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 5296842 - 5296895
Alignment:
Q  167 gatccaccatgattttttaaaagttacactttatagtttctataaaatcatgat 220  Q
    ||||||||| ||||||||||||| |||||||||||||||||  |||||| ||||    
T  5296842 gatccaccacgattttttaaaagctacactttatagtttctgcaaaatcgtgat 5296895  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 23822869 - 23822935
Alignment:
Q  178 attttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatc 244  Q
    ||||||||||||||| ||||| |||||||||||||||||   ||||||| ||| |||||||||||||    
T  23822869 attttttaaaagttaaactttgtagtttctataaaatcacagtggattatcgtaattctgacatatc 23822935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 36522564 - 36522526
Alignment:
Q  156 agaatcacgacgatccaccatgattttttaaaagttaca 194  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  36522564 agaatcacgacgatccatcatgattttttaaaagttaca 36522526  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 26526614 - 26526650
Alignment:
Q  138 tatcatggtgagtatataagaatcacgacgatccacc 174  Q
    ||||||||||||||||| |||||||||||||||||||    
T  26526614 tatcatggtgagtatatcagaatcacgacgatccacc 26526650  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 36729542 - 36729629
Alignment:
Q  129 tatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatca 216  Q
    ||||||||||||| |||||  | | ||||||||||||| || ||||||||||||  ||||| |||||||| ||| || | ||||||||    
T  36729542 tatgtttggtatcttggtggttgtgtaagaatcacgactatgcaccatgattttgcaaaagctacactttgtaggttttgtaaaatca 36729629  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 44426043 - 44426079
Alignment:
Q  227 ccgtgattctgacatatccaccttgatatcaaacatg 263  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  44426043 ccgtgattctgacaaatccaccatgatatcaaacatg 44426079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 32695412 - 32695520
Alignment:
Q  129 tatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattacc 228  Q
    |||||||||||||| ||| | ||| | |||||||| |  ||||| | |||||||||||||| |||||||||||  ||||| |||||||||  ||||||||    
T  32695412 tatgtttggtatcacggttaatatgtcagaatcacaataatccatcgtgattttttaaaagctacactttataacttctacaaaatcatggcggattacc 32695511  T
Q  229 gtgattctg 237  Q
     | ||||||    
T  32695512 ataattctg 32695520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 30808523 - 30808440
Alignment:
Q  178 attttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaaca 261  Q
    |||||| |||||||||| ||| ||| || |  ||||||| ||||||| ||||||||||||| ||||||||| ||||| ||||||    
T  30808523 atttttcaaaagttacattttgtagctttttcaaaatcacgatggatcaccgtgattctgatatatccaccatgataccaaaca 30808440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 262
Target Start/End: Complemental strand, 33944851 - 33944756
Alignment:
Q  167 gatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaacat 262  Q
    |||||| | ||||| |||||||| || |||||  || ||||  ||||||| ||||||| ||||||||||| ||| ||||||| |||||||||||||    
T  33944851 gatccatcgtgattctttaaaagctaaactttgcagcttctgcaaaatcacgatggatcaccgtgattctaacacatccaccgtgatatcaaacat 33944756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 32234553 - 32234436
Alignment:
Q  129 tatgtttggtatcatggtgagtatataagaatcacgacgatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatg--gatta 226  Q
    |||||||||||||||||||  ||| | ||||||||   |||||||||| ||||| || ||| |||||||| ||| |||||| |||||| | ||   || |    
T  32234553 tatgtttggtatcatggtggatatgtcagaatcacagtgatccaccataattttctataagctacactttgtagcttctatgaaatcacggtgatcatca 32234454  T
Q  227 ccgtgattctgacatatc 244  Q
    ||||||||||||||||||    
T  32234453 ccgtgattctgacatatc 32234436  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 34197875 - 34197909
Alignment:
Q  228 cgtgattctgacatatccaccttgatatcaaacat 262  Q
    ||||||||||||||||||||| |||||||||||||    
T  34197875 cgtgattctgacatatccaccgtgatatcaaacat 34197909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 32234500 - 32234552
Alignment:
Q  210 aaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaacat 262  Q
    ||||| ||| ||||| || |||||||||||||||||||| ||||| |||||||    
T  32234500 aaaattatggtggatcactgtgattctgacatatccaccatgataccaaacat 32234552  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 810833 - 810771
Alignment:
Q  180 tttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacata 242  Q
    ||||| |||| |||||||| ||| ||||||||||||||| ||||| ||| |||||||||||||    
T  810833 tttttgaaagctacactttgtagcttctataaaatcatggtggatcaccatgattctgacata 810771  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 23944565 - 23944632
Alignment:
Q  176 tgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatat 243  Q
    |||||||| |||| |||||||||||| ||| |  ||||||| |||| |||| ||||||||||||||||    
T  23944565 tgatttttaaaaaattacactttataatttttgcaaaatcacgatgaattatcgtgattctgacatat 23944632  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 14222651 - 14222732
Alignment:
Q  167 gatccaccatgattttttaaaagttacactttatagtttctataaaatcatgatggattaccgtgattctgacatatccacc 248  Q
    |||| ||| |||||||| ||||  |||||||||||| |||  |||||||||| ||||| ||| ||||||||| ||| |||||    
T  14222651 gatcgaccgtgatttttgaaaaactacactttatagcttcagtaaaatcatggtggatcaccatgattctgatatagccacc 14222732  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 31215818 - 31215855
Alignment:
Q  227 ccgtgattctgacatatccaccttgatatcaaacatgt 264  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  31215818 ccgtgattctgacacatccaccttgataccaaacatgt 31215855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 27664089 - 27664141
Alignment:
Q  167 gatccaccatgattttttaaaagttacactttatagtttctataaaatcatga 219  Q
    |||||||| ||||||| ||||||||||||||||||  || || ||||||||||    
T  27664089 gatccaccttgattttgtaaaagttacactttataccttttacaaaatcatga 27664141  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 172515 - 172567
Alignment:
Q  156 agaatcacgacgatccaccatgattttttaaaagttacactttatagtttcta 208  Q
    ||||||||||| |||||||||||||||| ||||| |||||||| ||| |||||    
T  172515 agaatcacgacaatccaccatgatttttcaaaagctacactttgtagcttcta 172567  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 58600 - 58667
Alignment:
Q  194 actttatagtttctataaaatcatgatggattaccgtgattctgacatatccaccttgatatcaaaca 261  Q
    |||||| ||||| | |||||||| ||||||| ||||| ||||||||||| ||||| | ||||||||||    
T  58600 actttaaagtttgtgtaaaatcacgatggatcaccgtaattctgacatacccaccataatatcaaaca 58667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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