View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0527_low_17 (Length: 294)
Name: NF0527_low_17
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0527_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 33859946 - 33859709
Alignment:
| Q |
1 |
catcctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttt |
100 |
Q |
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| T |
33859946 |
catcctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttt |
33859847 |
T |
|
| Q |
101 |
tgatgaaatttgttgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttg |
200 |
Q |
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| T |
33859846 |
tgatgaaatttgttgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttg |
33859747 |
T |
|
| Q |
201 |
tctagatcattgatgagctggtcagtcgtgttaagtga |
238 |
Q |
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| T |
33859746 |
tctagatcattgatgagctggtcagtcgtgttaagtga |
33859709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 33870296 - 33870061
Alignment:
| Q |
2 |
atcctttcagtctaaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaactttt |
101 |
Q |
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| T |
33870296 |
atcctttcagtttaaaagaatatgtaaaactcaattcaaatttctatggcctaaaatgattgcaagcaagc-gaaccttgctatcatatatggaactgtt |
33870198 |
T |
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| Q |
102 |
gatgaaatttgttgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgt |
201 |
Q |
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| T |
33870197 |
gatgaaatttgttgaacttgagctgtgaattgatcccactgtgagatgtatcgatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgt |
33870098 |
T |
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| Q |
202 |
ctagatcattgatgagctggtcagtcgtgttaagtga |
238 |
Q |
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| T |
33870097 |
ctaaatccttgatgagctggtcggtggtgttaagtga |
33870061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 33875050 - 33874827
Alignment:
| Q |
14 |
taaaacaatatgtaaaactcaattcaaatgtctatggattaaaatgatgtcaagcaaactgaaccttgctatcatatatggaacttttgatgaaatttgt |
113 |
Q |
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| T |
33875050 |
taaaagaatttgtaaagctcaattaaaatgtgaatggcataaaatgattgcaagctaaca-aaccttgctatcatatatggaacagttgatgaaatttgt |
33874952 |
T |
|
| Q |
114 |
tgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctcctatgtggaaaacaatgtcaaagttgtctagatcattga |
213 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| || |||| | ||| |||| |
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| T |
33874951 |
tgcacctgagctgtgaattgatcccactgtgagatgtatccatttgcatatggaagatctcctatgtggaaaacaatgtcgaaactgtccaaatccttga |
33874852 |
T |
|
| Q |
214 |
tgagctggtcagtcgtgttaagtga |
238 |
Q |
| |
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|||| ||||| || ||||||||||| |
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| T |
33874851 |
tgagttggtcggtggtgttaagtga |
33874827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 42783950 - 42783787
Alignment:
| Q |
75 |
aaccttgctatcatatatggaacttttgatgaaatttgttgcacttgagctgtgaattggtcccactgtgagatgtatccatttgcataaggcatatctc |
174 |
Q |
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||||| || ||||||||||| ||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||| |
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| T |
42783950 |
aacctggcaatcatatatggtactgttgatgcaattggttccacttgagctgtgaattggtcccactgtgagatgtatccgtttgcatatgttatatctc |
42783851 |
T |
|
| Q |
175 |
ctatgtggaaaacaatgtcaaagttgtctagatcattgatgagctggtcagtcgtgttaagtga |
238 |
Q |
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| T |
42783850 |
ctatgtggaaaacaacgtctatattttttaaatcctcgataagccggtcagtggtgttaagtga |
42783787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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