View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0527_low_2 (Length: 642)
Name: NF0527_low_2
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0527_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 44 - 626
Target Start/End: Original strand, 42824078 - 42824656
Alignment:
| Q |
44 |
ataaatagttgaattttaaatgaagtcagagaaaatgaaagaagtggtatnnnnnnnnnnnnnnnnnagagatattgggataagcagcaaca-gctaggg |
142 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |
|
|
| T |
42824078 |
ataaatacttgaattttaaatgaagtcggagaaaatgaaagaagtggtatatgatgatgat------agagatattgggataagcagcaacaagataggg |
42824171 |
T |
|
| Q |
143 |
tcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatcatttgggtc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824172 |
tcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaagtactgaaagcagtaagagaaatcatttgggtc |
42824271 |
T |
|
| Q |
243 |
ttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtccatgatcattctatattctaatattaattattaatta |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824272 |
ttcagtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtccatgatcattctatattctaatattaattattaatta |
42824371 |
T |
|
| Q |
343 |
tccattaattcaatgtagtatatagttcatctgttaggttcatattatatatattttcttccctttgtacaaatattaaagttcaaaggatttcattatt |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824372 |
tccattaattcaatgtagtatatagttcatctgttaggttcatattatatatattttcttccctttgtacaaatattaaagttcaaaggatttcattatt |
42824471 |
T |
|
| Q |
443 |
attaattaatttgtggttggaattgttggatgacttattatgctacagagccttgtagaactttttgttttttgtcaaactagaaaaggaaaaatggata |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42824472 |
attaattaatttgtggttggaattgttggatgacttattatgctacagagccttgtagaactttttgttttttgtcaaactagaaaaggaaaaatggata |
42824571 |
T |
|
| Q |
543 |
a-nnnnnnnnnnnnngaaagagaaattatgaagnnnnnnntattgacgaaaaaagaacatttaattctaataattttactagtgt |
626 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42824572 |
attttttttttttttgaaagagaaattatgaagaaaaaaatattgacgaaaaaagaacattcaattctaataattttactagtgt |
42824656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 6026272 - 6026331
Alignment:
| Q |
247 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
306 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
6026272 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
6026331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 6026175 - 6026247
Alignment:
| Q |
138 |
tagggtcaagtccaccaagctgtgagcacaagtgttatggatgtaatccatgtgaagccattcaagttccaag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||| ||| |||||||||||| | |||||| ||||| |
|
|
| T |
6026175 |
tagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaag |
6026247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1668 times since January 2019
Visitors: 3672