View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0527_low_20 (Length: 269)

Name: NF0527_low_20
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0527_low_20
NF0527_low_20
[»] chr4 (15 HSPs)
chr4 (1-261)||(3254051-3254308)
chr4 (68-181)||(28497486-28497600)
chr4 (81-175)||(35555831-35555927)
chr4 (75-181)||(54470203-54470311)
chr4 (106-163)||(47611741-47611799)
chr4 (93-173)||(29398822-29398903)
chr4 (79-181)||(17900476-17900580)
chr4 (100-171)||(42639224-42639296)
chr4 (100-181)||(51252665-51252747)
chr4 (119-175)||(31459032-31459089)
chr4 (93-181)||(41192832-41192921)
chr4 (119-175)||(55768724-55768781)
chr4 (119-175)||(55832980-55833037)
chr4 (93-164)||(42285897-42285969)
chr4 (119-170)||(49987435-49987487)
[»] chr1 (16 HSPs)
chr1 (62-181)||(2544595-2544716)
chr1 (68-208)||(35828721-35828863)
chr1 (107-181)||(27848016-27848091)
chr1 (92-181)||(43423715-43423805)
chr1 (68-174)||(36339974-36340082)
chr1 (92-175)||(48431602-48431686)
chr1 (61-139)||(10569231-10569310)
chr1 (92-206)||(19908235-19908350)
chr1 (100-181)||(1661426-1661508)
chr1 (128-181)||(52561843-52561897)
chr1 (100-180)||(8343062-8343143)
chr1 (108-212)||(9509283-9509388)
chr1 (107-175)||(32404737-32404806)
chr1 (107-174)||(5338727-5338795)
chr1 (108-175)||(15085936-15086004)
chr1 (68-174)||(40416374-40416482)
[»] chr2 (17 HSPs)
chr2 (68-181)||(43752118-43752233)
chr2 (107-164)||(9578914-9578972)
chr2 (75-175)||(23714439-23714541)
chr2 (75-175)||(24102111-24102213)
chr2 (68-139)||(3481180-3481252)
chr2 (126-181)||(18958903-18958959)
chr2 (108-175)||(45367837-45367905)
chr2 (101-175)||(8180782-8180857)
chr2 (60-181)||(12141540-12141663)
chr2 (101-175)||(25834683-25834758)
chr2 (75-141)||(42543272-42543339)
chr2 (152-208)||(11017285-11017339)
chr2 (119-175)||(19024182-19024239)
chr2 (118-181)||(6218963-6219027)
chr2 (109-212)||(9556582-9556685)
chr2 (108-175)||(11992320-11992388)
chr2 (118-181)||(41330125-41330189)
[»] chr6 (6 HSPs)
chr6 (68-181)||(14389339-14389453)
chr6 (10-181)||(9593821-9593992)
chr6 (107-175)||(608159-608228)
chr6 (107-207)||(33084028-33084129)
chr6 (108-175)||(5258360-5258428)
chr6 (72-169)||(24665818-24665918)
[»] chr5 (16 HSPs)
chr5 (69-181)||(79509-79623)
chr5 (97-181)||(33667212-33667297)
chr5 (108-185)||(31636132-31636210)
chr5 (96-212)||(6888958-6889075)
chr5 (126-181)||(14667759-14667815)
chr5 (127-175)||(27895-27944)
chr5 (92-212)||(6859346-6859467)
chr5 (100-208)||(14749276-14749385)
chr5 (79-165)||(42199298-42199386)
chr5 (141-207)||(37124539-37124603)
chr5 (61-181)||(2712940-2713062)
chr5 (107-175)||(28676597-28676666)
chr5 (108-175)||(14665716-14665784)
chr5 (120-175)||(15168794-15168850)
chr5 (108-175)||(16347590-16347658)
chr5 (108-175)||(38684969-38685037)
[»] chr3 (14 HSPs)
chr3 (118-208)||(54365199-54365287)
chr3 (76-181)||(36820140-36820247)
chr3 (104-181)||(50960841-50960919)
chr3 (118-181)||(26490311-26490375)
chr3 (68-173)||(42510187-42510292)
chr3 (122-181)||(44134056-44134116)
chr3 (118-185)||(27917562-27917630)
chr3 (108-175)||(49503766-49503834)
chr3 (94-208)||(39600879-39600994)
chr3 (118-180)||(54128375-54128438)
chr3 (93-180)||(2340911-2340999)
chr3 (109-164)||(21200561-21200617)
chr3 (79-181)||(34719254-34719358)
chr3 (108-175)||(47233808-47233876)
[»] chr8 (15 HSPs)
chr8 (68-175)||(36143367-36143476)
chr8 (126-206)||(45512725-45512808)
chr8 (100-208)||(44681243-44681352)
chr8 (60-174)||(43904828-43904947)
chr8 (76-208)||(44373745-44373879)
chr8 (118-175)||(18752098-18752155)
chr8 (127-212)||(33511325-33511407)
chr8 (118-181)||(41444548-41444612)
chr8 (126-208)||(13171879-13171962)
chr8 (109-163)||(41971991-41972046)
chr8 (118-175)||(45419239-45419297)
chr8 (68-212)||(10824335-10824477)
chr8 (92-207)||(32043560-32043676)
chr8 (109-164)||(35643814-35643870)
chr8 (71-138)||(39953438-39953506)
[»] chr7 (15 HSPs)
chr7 (75-181)||(48736077-48736185)
chr7 (79-181)||(36514389-36514493)
chr7 (95-175)||(36101964-36102045)
chr7 (118-181)||(7189448-7189512)
chr7 (92-175)||(42187472-42187556)
chr7 (118-175)||(26742118-26742176)
chr7 (118-175)||(40169651-40169709)
chr7 (120-181)||(47848670-47848732)
chr7 (95-140)||(16013326-16013371)
chr7 (72-174)||(12966025-12966129)
chr7 (118-181)||(27893770-27893834)
chr7 (118-181)||(38920790-38920854)
chr7 (108-175)||(43281676-43281744)
chr7 (108-175)||(45836692-45836760)
chr7 (129-164)||(47236238-47236274)
[»] scaffold0018 (1 HSPs)
scaffold0018 (107-181)||(44079-44154)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 3254308 - 3254051
Alignment:
Q  1 tcttagtgattcctaatagtttctcttaaaaaatttctagttcttcatctatcttgaagaatttgattatccttcatttgatctaccctcctactacata 100  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3254308 tcttagtgattcctaatagtttctcttaaaatttttctagttcttcatctatcttgaagaatctgattatccttcatttgatctaccctcctactacata 3254209  T
Q  101 atccataggtcttcacactacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcat 200  Q
    || ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3254208 attcataggtcttcacactatatgtccaaaccacctaagctattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcat 3254109  T
Q  201 ttctaatcatatgatctcatatattcttacgacaaaagaacctaacattctcgtctctgct 261  Q
    ||||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3254108 ttctaatcat---atctcatacattcttacgacaaaagaacctaacattctcgtctctgct 3254051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 28497600 - 28497486
Alignment:
Q  68 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagttattttccatcatcttttctactaaa 166  Q
    |||||| ||| |||||||| ||||| ||||||||||| | | |||||| | ||||||| ||||||||||||||   |||||||  |||||||||||||||    
T  28497600 tatcctccatctgatctactctccttactacataatctacaagtcttctctctacatgcccaaaccacctaagcctttttccacaatcttttctactaaa 28497501  T
Q  167 ggtgctaccacaact 181  Q
    ||||||||| |||||    
T  28497500 ggtgctaccccaact 28497486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 35555831 - 35555927
Alignment:
Q  81 atctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||| |||||| ||||| |||||| |||||||| | ||| ||| ||||||||||||||| || |||| | |||||||||||||| ||||||||||    
T  35555831 atctactctcctaactacagaatccacaggtcttctctctaaatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctacc 35555927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 54470311 - 54470203
Alignment:
Q  75 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 172  Q
    |||||||| ||| ||||| ||||||||||  | | |||||| | ||||||| ||||||||| ||||| || |||||| |||||||||||||| |||||||    
T  54470311 catttgatttactctccttactacataatttacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgct 54470212  T
Q  173 accacaact 181  Q
    ||| |||||    
T  54470211 accccaact 54470203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 47611799 - 47611741
Alignment:
Q  106 taggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctact 163  Q
    ||||||||| | ||||||| ||||||||||||||  |||||||||||||||||||||||    
T  47611799 taggtcttctctctacatgcccaaaccacctaagcctattttccatcatcttttctact 47611741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 173
Target Start/End: Complemental strand, 29398903 - 29398822
Alignment:
Q  93 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgcta 173  Q
    |||||| |||| |||||||||| | ||||||| ||||||||| ||||  ||||||||| |||||||||||| | ||||||||    
T  29398903 actacagaatctataggtcttctctctacatgcccaaaccacataagcatattttccaccatcttttctaccataggtgcta 29398822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 17900580 - 17900476
Alignment:
Q  79 tgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacca 176  Q
    |||||||| |||||| |||||||||||| |||||||| | |||| || ||||||||| | ||| || |||| | | |||||||||||| ||||||||||     
T  17900580 tgatctactctcctatctacataatccacaggtcttctctctacgtgcccaaaccacatgagtctagtttctaccgtcttttctactataggtgctaccc 17900481  T
Q  177 caact 181  Q
    |||||    
T  17900480 caact 17900476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 42639224 - 42639296
Alignment:
Q  100 aatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgc 171  Q
    |||||||| |||||| | ||||||||||||||||||||||  |  |||||| |||||||||||||| ||||||    
T  42639224 aatccataagtcttctctctacatgtccaaaccacctaagcctggtttccaccatcttttctactataggtgc 42639296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 51252665 - 51252747
Alignment:
Q  100 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    |||||| | |||||| | ||||||| ||| ||||||||||  || |||||| |||||||||||||| |||||||||| |||||    
T  51252665 aatccacatgtcttctctctacatgcccataccacctaagcctagtttccaccatcttttctactagaggtgctaccccaact 51252747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 31459089 - 31459032
Alignment:
Q  119 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||| ||||||||||||||  ||||||| | |||||||||||||| ||||||||||    
T  31459089 tacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 31459032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 41192921 - 41192832
Alignment:
Q  93 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    |||||| |||| | |||||||| | |||||||  |||| ||||||||| || |||||| |||||||||||||  |||||||||| |||||    
T  41192921 actacagaatctacaggtcttctctctacatgcacaaatcacctaagtctagtttccaccatcttttctactgtaggtgctaccccaact 41192832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 55768724 - 55768781
Alignment:
Q  119 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||||| |||||||||||   |||||||||| ||||||||||||| ||||||||||    
T  55768724 tacatgtctaaaccacctaaacctattttccatgatcttttctactataggtgctacc 55768781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 55832980 - 55833037
Alignment:
Q  119 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||||| |||||||||||   |||||||||| ||||||||||||| ||||||||||    
T  55832980 tacatgtctaaaccacctaaacctattttccatgatcttttctactataggtgctacc 55833037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 42285897 - 42285969
Alignment:
Q  93 actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 164  Q
    |||||| |||||| |||||||| |  |||||| ||||||||||||||| || |||| | ||||||||||||||    
T  42285897 actacagaatccacaggtcttctctatacatgcccaaaccacctaagtctagtttctaccatcttttctacta 42285969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 49987487 - 49987435
Alignment:
Q  119 tacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtg 170  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||||| |||||    
T  49987487 tacatgaccaaaccacctaagcctattttccaccatcttttctactataggtg 49987435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 2544716 - 2544595
Alignment:
Q  62 tttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttc 159  Q
    ||||| |||||| ||| |||||||| ||||| |||| | |||| |||||||||| | ||||||||||||||||||||||| | ||||||| |||||||||    
T  2544716 tttgactatcctccatctgatctactctccttactatagaatctataggtcttctctctacatgtccaaaccacctaagtctgttttccaccatcttttc 2544617  T
Q  160 tactaaaggtgctaccacaact 181  Q
    ||||| |||||||||| |||||    
T  2544616 tactataggtgctaccccaact 2544595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 208
Target Start/End: Original strand, 35828721 - 35828863
Alignment:
Q  68 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaa-gttattttccatcatcttttctactaa 165  Q
    |||||| ||| |||||| | ||||| ||||||||||| |||||||||| | ||||| |||||||||||||||   ||||||||| |||||||||||| |     
T  35828721 tatcctccatatgatcttctctccttactacataatctataggtcttctctctacacgtccaaaccacctaaccctattttccaccatcttttctaccat 35828820  T
Q  166 aggtgctaccacaactttcttattaatattttcatttctaatc 208  Q
    |||||||||   |||| |||   ||||||| ||||||||||||    
T  35828821 aggtgctactcaaactctctctctaatattgtcatttctaatc 35828863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 27848016 - 27848091
Alignment:
Q  107 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    |||||||| | || |||| |||||||||||||| |||||||| | |||||||||||| | ||||||||||||||||    
T  27848016 aggtcttctctctgcatgcccaaaccacctaagcttattttctaccatcttttctaccacaggtgctaccacaact 27848091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 43423805 - 43423715
Alignment:
Q  92 tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    |||||||||||| | | |||||| | ||||||| ||||||||||||||  || |||||| |||||||||||||| ||||| |||| |||||    
T  43423805 tactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactataggtgttaccccaact 43423715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 36339974 - 36340082
Alignment:
Q  68 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacct-aagttattttccatcatcttttctactaa 165  Q
    |||||| ||| ||||| |||| ||| |||||| |||| |||||||||| | || |||||| ||||||||| ||  ||||||||| ||||||||||| ||     
T  36339974 tatcctccatctgatcaacccgccttactacaaaatctataggtcttctctctccatgtctaaaccacctaaacctattttccaccatcttttctaatat 36340073  T
Q  166 aggtgctac 174  Q
    |||||||||    
T  36340074 aggtgctac 36340082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 48431602 - 48431686
Alignment:
Q  92 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| |||| | | |||||| | ||||||| ||||||||||||||  ||||||||| |||||||||||||| ||| ||||||    
T  48431602 tactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctactataggggctacc 48431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 10569231 - 10569310
Alignment:
Q  61 atttgattatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaag 139  Q
    ||||||||| ||| ||| | ||||||||||| ||||||| |||| | |||||||| | ||||||| ||||||||||||||    
T  10569231 atttgattaccctccatctaatctaccctccgtactacagaatctacaggtcttctctctacatgcccaaaccacctaag 10569310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 19908235 - 19908350
Alignment:
Q  92 tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttatta 190  Q
    |||||||||||| | |||| ||| | ||||||| ||||| |||||||  ||  |||||  |||||||| ||||| |||||||||||||||| |||  |||    
T  19908235 tactacataatctacaggttttctctctacatgcccaaatcacctaaacttggtttcccccatcttttttactataggtgctaccacaactctctcttta 19908334  T
Q  191 atattttcatttctaa 206  Q
    || || ||||||||||    
T  19908335 attttgtcatttctaa 19908350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 1661508 - 1661426
Alignment:
Q  100 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    |||| |||||||||| | |||||||  ||||||| || ||  ||||||||| |||||||||||||| |||||||||| |||||    
T  1661508 aatctataggtcttctctctacatgctcaaaccatctgagcctattttccaccatcttttctactataggtgctaccccaact 1661426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 52561843 - 52561897
Alignment:
Q  128 aaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||||||||  ||||||| |||||| |||||||||||||||||||| |||||    
T  52561843 aaaccacctaagcctattttctatcatcatttctactaaaggtgctaccccaact 52561897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 8343062 - 8343143
Alignment:
Q  100 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaac 180  Q
    |||||| |||||||| | ||||||| |||  |||||||||  || |||||| |||||||||||||||||||| |||| ||||    
T  8343062 aatccacaggtcttctctctacatgcccagtccacctaagcctagtttccaccatcttttctactaaaggtgttaccccaac 8343143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 9509388 - 9509283
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaa 206  Q
    ||||||| | ||||||| |||||| |||||||  ||||||  | |||||||||||||| |||||||||| ||||| |||   ||||  | ||||||||||    
T  9509388 ggtcttctctctacatgcccaaactacctaagcctattttttaccatcttttctactataggtgctaccccaactctctctctaatggtgtcatttctaa 9509289  T
Q  207 tcatat 212  Q
    ||||||    
T  9509288 tcatat 9509283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 32404737 - 32404806
Alignment:
Q  107 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||||| | |||||| |||||||||||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  32404737 aggtcttctctctacatatccaaaccacctaagcctattttccaccatcttttttactataggtgttacc 32404806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 5338795 - 5338727
Alignment:
Q  107 aggtcttcacactacatgtccaaaccacctaagtt-attttccatcatcttttctactaaaggtgctac 174  Q
    |||||||| | || |||| |||||||||||||| | | |||||| |||||||||||||| |||||||||    
T  5338795 aggtcttctctctgcatgcccaaaccacctaagctcagtttccaccatcttttctactataggtgctac 5338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 15086004 - 15085936
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  15086004 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 15085936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 40416482 - 40416374
Alignment:
Q  68 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 165  Q
    |||||| ||| |||||||| ||||| |||||| |||| | || ||||| | ||||||| | ||||||||||||  |  |||||| ||||||||||||||     
T  40416482 tatcctgcatctgatctactctccttactacaaaatctacagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttctactat 40416383  T
Q  166 aggtgctac 174  Q
    |||||||||    
T  40416382 aggtgctac 40416374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 43752118 - 43752233
Alignment:
Q  68 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaa 165  Q
    |||||| ||| |||||||| |||| |||||||||||| |||||||||| | ||||||||||||| ||||||||  ||||||| | || |||||||||||     
T  43752118 tatcctccatctgatctactctccctactacataatctataggtcttctctctacatgtccaaatcacctaagcctattttctaccaccttttctactat 43752217  T
Q  166 aggtgctaccacaact 181  Q
    |||||||||| |||||    
T  43752218 aggtgctaccccaact 43752233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 9578914 - 9578972
Alignment:
Q  107 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 164  Q
    |||||||| | ||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  9578914 aggtcttctctctacatgtccaaaccacctaagtctattttacatcatctttactacta 9578972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 23714439 - 23714541
Alignment:
Q  75 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 172  Q
    |||||||||||| ||||| ||||||||||||| | |||||| | ||||||| | |||| || ||||| || |||||| |||||||||||||| | |||||    
T  23714439 catttgatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgct 23714538  T
Q  173 acc 175  Q
    |||    
T  23714539 acc 23714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 24102111 - 24102213
Alignment:
Q  75 catttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 172  Q
    |||||||||||| ||||| ||||||||||||| | |||||| | ||||||| | |||| || ||||| || |||||| |||||||||||||| | |||||    
T  24102111 catttgatctactctccttactacataatccacaagtcttctctctacatgcctaaactacataagtctagtttccaccatcttttctactatatgtgct 24102210  T
Q  173 acc 175  Q
    |||    
T  24102211 acc 24102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 3481252 - 3481180
Alignment:
Q  68 tatccttcatttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaag 139  Q
    |||||| ||| |||||||| |||||  ||||| |||| |||||||||| | ||||||||||||||||||||||    
T  3481252 tatcctccatctgatctactctccttgctacagaatctataggtcttctctctacatgtccaaaccacctaag 3481180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 18958959 - 18958903
Alignment:
Q  126 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||||||||||  ||||||||| |||||||||||||| |||||||||| |||||    
T  18958959 ccaaaccacctaagcctattttccaccatcttttctactataggtgctaccccaact 18958903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 45367837 - 45367905
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | |||||||||||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  45367837 ggtcttctctctacatgtccaaaccatctaaggttattttctaccaacttttctactataggtgctacc 45367905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 8180857 - 8180782
Alignment:
Q  101 atccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||| |||||||| | ||||||| |||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  8180857 atccacaggtcttctctctacatgcccaaaccatctaagcttattttctaccaacttttctactataggtgctacc 8180782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 12141663 - 12141540
Alignment:
Q  60 aatttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttt 157  Q
    ||||||| ||||||  || |||||||| ||||| |||| | |||| | ||||||||   |||| || ||||||||||||||  | ||||||| |||||||    
T  12141663 aatttgactatcctcaatctgatctactctccttactagagaatctacaggtcttctttctacgtgcccaaaccacctaagcctcttttccaccatcttt 12141564  T
Q  158 tctactaaaggtgctaccacaact 181  Q
    ||||||| |||||||||| |||||    
T  12141563 tctactataggtgctaccccaact 12141540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 25834758 - 25834683
Alignment:
Q  101 atccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||| |||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  25834758 atccacaggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 25834683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 42543339 - 42543272
Alignment:
Q  75 catttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagtt 141  Q
    |||||||||||| |||||| ||||| |||||| |||||||| |  |||||| ||||||||||||||||    
T  42543339 catttgatctactctcctaactacagaatccacaggtcttctctgtacatgcccaaaccacctaagtt 42543272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 11017339 - 11017285
Alignment:
Q  152 atcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 208  Q
    ||||||||||||| |||||||||| ||||| |||  |||||||||||||| ||||||    
T  11017339 atcttttctactataggtgctacctcaactctct--ttaatattttcattcctaatc 11017285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 19024239 - 19024182
Alignment:
Q  119 tacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||||||||||||||||| ||| |||||| ||||||||| | || ||||||||||    
T  19024239 tacatgtccaaaccacctaagcttactttccaccatcttttcaaatataggtgctacc 19024182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 6219027 - 6218963
Alignment:
Q  118 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||||||||||||||||||  |||| ||||  ||||||||||||| | |||||||| |||||    
T  6219027 ctacatgtccaaaccacctaagcctattatccactatcttttctactataagtgctaccccaact 6218963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 9556582 - 9556685
Alignment:
Q  109 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaat 207  Q
    |||||| | ||||||| | ||||||||||||  ||||||||| ||| |||||||||| | ||| |||| |||||||||   |||| || |||||||||||    
T  9556582 gtcttctctctacatgcctaaaccacctaagcctattttccaccat-ttttctactataagtgttaccccaactttctctctaatgttgtcatttctaat 9556680  T
Q  208 catat 212  Q
    |||||    
T  9556681 catat 9556685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 11992320 - 11992388
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | ||| |||||||||||| ||||| |||||||| | || ||||||||||| ||||||||||    
T  11992320 ggtcttctctctatatgtccaaaccatctaagcttattttctaccaacttttctactataggtgctacc 11992388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 41330189 - 41330125
Alignment:
Q  118 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    |||||||| ||||||| |||||  ||||||  |||||||||||||||||||||| |||| |||||    
T  41330189 ctacatgttcaaaccatctaagcctatttttgatcatcttttctactaaaggtgttacctcaact 41330125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 14389339 - 14389453
Alignment:
Q  68 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagttattttccatcatcttttctactaaa 166  Q
    |||||| ||| |||||||  ||||| |||||| | || |||||||||| | ||||||||||||||||||||||||  |||||| |||||||||||| | |    
T  14389339 tatcctccatctgatctattctccttactacaaagtctataggtcttctctctacatgtccaaaccacctaagtttgtttccaccatcttttctacgata 14389438  T
Q  167 ggtgctaccacaact 181  Q
    ||||||||| |||||    
T  14389439 ggtgctacctcaact 14389453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 9593821 - 9593992
Alignment:
Q  10 ttcctaatagtttctcttaaaaaatttctagttcttcatcta--tcttgaagaatttgattatccttcatttgatctaccctcct-actacataatccat 106  Q
    ||||||||||||||||||| ||  ||||||| ||||| ||||  ||||||    ||||| | |||| ||| |||||||| || || ||||||  ||| |     
T  9593821 ttcctaatagtttctcttataatttttctaggtcttcctctacctcttga----tttgactctcctccatctgatctactcttcttactacagcatctac 9593916  T
Q  107 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    | |||||| | ||||||| ||||||||||||||  ||||||| | ||||||||||||||| ||||||||| |||||    
T  9593917 atgtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactaatggtgctaccccaact 9593992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 608228 - 608159
Alignment:
Q  107 aggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||||| | |||||||||||||||| |||||  ||||||| |||| ||||||||||| ||||| ||||    
T  608228 aggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttttctactataggtgatacc 608159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 33084129 - 33084028
Alignment:
Q  107 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttcta 205  Q
    |||||||| | ||||||  ||||||||||||||| || |||| | |||||||||||| | |||||||||| ||||| |||   ||||||  |||||||||    
T  33084129 aggtcttctctctacattcccaaaccacctaagtctagtttctaccatcttttctaccataggtgctaccccaactctctctctaatatcgtcatttcta 33084030  T
Q  206 at 207  Q
    ||    
T  33084029 at 33084028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 5258360 - 5258428
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  5258360 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 5258428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 24665918 - 24665818
Alignment:
Q  72 cttcatttgatctaccctcct-actacataa-tccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaagg 168  Q
    |||||| |||||||| ||||| |||||| || || | |||||||| | ||||||||||||||||||||||  ||||||| | ||| |||||||||| |||    
T  24665918 cttcatctgatctactctccttactacaaaaatctacaggtcttctctctacatgtccaaaccacctaagcctattttctaccatattttctactatagg 24665819  T
Q  169 t 169  Q
    |    
T  24665818 t 24665818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 79623 - 79509
Alignment:
Q  69 atccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaa 166  Q
    ||||| ||||||||| || ||||| |||||| |||| |||||||||| | ||||||||||||||||||||| | | ||||||| |||||||||||||| |    
T  79623 atcctccatttgatcgactctccttactacagaatctataggtcttctctctacatgtccaaaccacctaattatgttttccaccatcttttctactata 79524  T
Q  167 ggtgctaccacaact 181  Q
    ||| ||||| |||||    
T  79523 ggtactaccccaact 79509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 33667297 - 33667212
Alignment:
Q  97 cataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||||| |||||||| | ||||||| ||||||||||||||| || |||| | |||||||||||||| |||||||||| |||||    
T  33667297 cataatccacaggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaact 33667212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 31636132 - 31636210
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttct 185  Q
    ||||||| | ||||||| ||||||||||||||| || |||| | |||||||||||||| |||||||||| |||||||||    
T  31636132 ggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccccaactttct 31636210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 6889075 - 6888958
Alignment:
Q  96 acataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatat 194  Q
    |||||||||| | |||||| | ||||||||||||||||| ||||  ||||||||| |||||||||  ||| | |||||||| ||||| | |   ||||||    
T  6889075 acataatccacaagtcttctctctacatgtccaaaccacttaagcctattttccaccatcttttcctctatacgtgctaccccaactctttctgtaatat 6888976  T
Q  195 tttcatttctaatcatat 212  Q
    | ||||||||||||||||    
T  6888975 tgtcatttctaatcatat 6888958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 14667815 - 14667759
Alignment:
Q  126 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  14667815 ccaaaccacctaagtctattttccaccatcttttctactataggtgctaccccaact 14667759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 27944 - 27895
Alignment:
Q  127 caaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  27944 caaaccacctaagcctattttccatcatcttttctactataggtgctacc 27895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 6859467 - 6859346
Alignment:
Q  92 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttatta 190  Q
    ||||||| |||||| | |||||| | |||| ||||||||||||||| |  | ||||||| |||||| |  |||| |||||||||| ||||| |||   ||    
T  6859467 tactacagaatccacaagtcttctctctacgtgtccaaaccacctatgcctgttttccaccatcttcttcactataggtgctaccccaactctctgtcta 6859368  T
Q  191 atattttcatttctaatcatat 212  Q
    ||||| ||||||||||||||||    
T  6859367 atattgtcatttctaatcatat 6859346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 14749385 - 14749276
Alignment:
Q  100 aatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttc 198  Q
    |||||| |||||||| | |||||||||||||||| |||||| || |||| | ||  |||||||||| |||||||||  ||||| |||   |||| |||||    
T  14749385 aatccacaggtcttctctctacatgtccaaaccatctaagtctagtttctaccaatttttctactataggtgctacaccaactctctctctaatgttttc 14749286  T
Q  199 atttctaatc 208  Q
    ||||||||||    
T  14749285 atttctaatc 14749276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 42199386 - 42199298
Alignment:
Q  79 tgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 165  Q
    |||||||| ||||| |||||| |||| | | |||||| | ||||||| ||||||||||||||| || |||||| |||||||||||||||    
T  42199386 tgatctactctccttactacagaatctacatgtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctactaa 42199298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 37124603 - 37124539
Alignment:
Q  141 tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaat 207  Q
    ||||||||||||||||||| |||| |||||||||| | ||| |||  ||||| ||||||||||||||    
T  37124603 tattttccatcatcttttcaactataggtgctaccccgactctct--ttaattttttcatttctaat 37124539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 2713062 - 2712940
Alignment:
Q  61 atttgattatccttcatttgatctaccctcctac-tacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatctttt 158  Q
    |||||| | |||| ||| |||||||| ||||| | |||| |||||| |||||||| | ||||||| ||||||||||||||| || | || | ||||||||    
T  2713062 atttgactctcctccatctgatctactctccttcatacagaatccacaggtcttctctctacatgcccaaaccacctaagtctagtctctaccatctttt 2712963  T
Q  159 ctactaaaggtgctaccacaact 181  Q
      |||| |||||||||| |||||    
T  2712962 agactataggtgctaccccaact 2712940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 28676666 - 28676597
Alignment:
Q  107 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||||| | ||||||| | ||||||||||||  ||||||||| |||||||||||||| || |||||||    
T  28676666 aggtcttctctctacatgccgaaaccacctaagactattttccaccatcttttctactatagctgctacc 28676597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 14665784 - 14665716
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | |||||||||||||||| |||||  ||||||| |||| ||| ||||||| ||||||||||    
T  14665784 ggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttctctactataggtgctacc 14665716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 15168850 - 15168794
Alignment:
Q  120 acatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||||||||||||| ||  ||||||| | |||||||||||||| ||||||||||    
T  15168850 acatgtccaaaccaccttagcctattttctaccatcttttctactataggtgctacc 15168794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 16347590 - 16347658
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  16347590 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 16347658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 38685037 - 38684969
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  38685037 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 38684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 54365199 - 54365287
Alignment:
Q  118 ctacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 208  Q
    ||||||| |||||||||||||| ||||||||  ||| |||||||||| |||||||||| ||||| |||   ||||||||||||||||||||    
T  54365199 ctacatgcccaaaccacctaagctattttccgccatattttctactataggtgctaccccaactctct--ctaatattttcatttctaatc 54365287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 36820140 - 36820247
Alignment:
Q  76 atttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgcta 173  Q
    ||||||||||||||||| ||||||||||| || ||||||| |  |||||||| ||||||||||||  || |||||| ||||||| ||| || ||||||||    
T  36820140 atttgatctaccctccttactacataatctatgggtcttctctttacatgtctaaaccacctaagcctagtttccaccatctttgctaatataggtgcta 36820239  T
Q  174 ccacaact 181  Q
    || |||||    
T  36820240 ccccaact 36820247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 50960841 - 50960919
Alignment:
Q  104 cataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||||||| | ||||||| ||||||||||||||  ||||||| | |||||||||||||| |||||||||| |||||    
T  50960841 cataggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaact 50960919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 26490375 - 26490311
Alignment:
Q  118 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||||||||||||||||||  ||||||| | |||||||||||||| |||||||||| |||||    
T  26490375 ctacatgtccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcaact 26490311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 42510187 - 42510292
Alignment:
Q  68 tatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaa 165  Q
    |||||| ||| |||||||| ||||| || ||| |||| |||||||||| |  |||||||||||||||||||||  |||||||||  |||||||||||||     
T  42510187 tatcctccatctgatctactctccttaccacaaaatctataggtcttctc--tacatgtccaaaccacctaagcctattttccactatcttttctactat 42510284  T
Q  166 aggtgcta 173  Q
    ||||||||    
T  42510285 aggtgcta 42510292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 44134056 - 44134116
Alignment:
Q  122 atgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| |||||    
T  44134056 atgtccaaaccacctaagtctattttccaccatcttttctactagaggcgctaccccaact 44134116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 27917630 - 27917562
Alignment:
Q  118 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttct 185  Q
    |||||||||||||||| |||||  ||||| | | |||||||||||||| |||||||||| |||||||||    
T  27917630 ctacatgtccaaaccatctaagcctatttcctaccatcttttctactataggtgctaccccaactttct 27917562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 49503766 - 49503834
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | ||||||| ||||||||||||||  ||||||| | |||||||||||||| ||||||||||    
T  49503766 ggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctacc 49503834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 39600879 - 39600994
Alignment:
Q  94 ctacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaat 192  Q
    ||||| |||| | |||||||| |  |||||| | |||||||||||| || ||||||| |||||||||||||| |||| ||||| ||||| |||   ||||    
T  39600879 ctacagaatctacaggtcttctctttacatgccaaaaccacctaagcttgttttccaccatcttttctactataggtactaccccaactctctctctaat 39600978  T
Q  193 attttcatttctaatc 208  Q
     || ||||||||||||    
T  39600979 gttgtcatttctaatc 39600994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 54128438 - 54128375
Alignment:
Q  118 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaac 180  Q
    ||||||| ||||||||||||||  ||||||| | |||||||||||||| |||||||||| ||||    
T  54128438 ctacatgcccaaaccacctaagcctattttctaccatcttttctactataggtgctaccccaac 54128375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 2340911 - 2340999
Alignment:
Q  93 actacataatccataggtcttcacactacatgtccaaaccacctaagtt-attttccatcatcttttctactaaaggtgctaccacaac 180  Q
    ||||||||||| |||| ||||  | |||||||  |||||||| |||| | |||||||| |||||||||||| || ||||||||| ||||    
T  2340911 actacataatctatagatcttttctctacatgctcaaaccacgtaagatgattttccaccatcttttctacgaatggtgctaccccaac 2340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 21200617 - 21200561
Alignment:
Q  109 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 164  Q
    |||||| | ||||||| ||||||||||||||| || |||||| ||||||||||||||    
T  21200617 gtcttctctctacatgcccaaaccacctaagtctagtttccaccatcttttctacta 21200561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 34719254 - 34719358
Alignment:
Q  79 tgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagtt-attttccatcatcttttctactaaaggtgctacca 176  Q
    |||||||| ||||| |||||| |||| | ||| |||| | ||| |||| |||| |||||||||| | |||||| |||||||||||| | ||||||||||     
T  34719254 tgatctactctccttactacaaaatcaacaggccttctctctatatgttcaaaacacctaagttgactttccaccatcttttctacgataggtgctaccc 34719353  T
Q  177 caact 181  Q
    |||||    
T  34719354 caact 34719358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 47233808 - 47233876
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  47233808 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 47233876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 36143476 - 36143367
Alignment:
Q  68 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 165  Q
    |||||| |||||||||||| |||| ||||||| |||| |||||||||  | ||| ||| ||||||||||||||| ||||||||| ||||| |||| |||     
T  36143476 tatcctccatttgatctactctccatactacagaatctataggtcttttctctaaatgcccaaaccacctaagtctattttccaccatctattctgctat 36143377  T
Q  166 aggtgctacc 175  Q
    ||||||||||    
T  36143376 aggtgctacc 36143367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 45512725 - 45512808
Alignment:
Q  126 ccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact--ttcttattaatattttcatttctaa 206  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||   |||  |||||||||||||||||||    
T  45512725 ccaaaccatctaagcttattttccatcatcttttctactataggtgctaccccaactccctctctttaatattttcatttctaa 45512808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 44681243 - 44681352
Alignment:
Q  100 aatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttc 198  Q
    |||| |||||||||| | ||| || ||||||||  ||||| |||||||||| ||||||||||| || |||||||||||||||| |||   |||| || ||    
T  44681243 aatctataggtcttctctctagatttccaaaccttctaagcttattttccaccatcttttctattataggtgctaccacaactgtctctctaatgttgtc 44681342  T
Q  199 atttctaatc 208  Q
    ||||||||||    
T  44681343 atttctaatc 44681352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 43904828 - 43904947
Alignment:
Q  60 aatttgattatccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag----ttattttccatcatc 154  Q
    ||||||| |||||| ||| |||||||  || || ||||||  ||| |||||||||| | ||||||||||||||||||||||    |||||||||  ||||    
T  43904828 aatttgactatcctccatctgatctattcttcttactacaacatctataggtcttctctctacatgtccaaaccacctaagcttattattttcctccatc 43904927  T
Q  155 ttttctactaaaggtgctac 174  Q
    |||||||||| || ||||||    
T  43904928 ttttctactatagatgctac 43904947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 44373879 - 44373745
Alignment:
Q  76 atttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgcta 173  Q
    ||||||||||| ||| | |||||| |||| ||||||||| || |||||||  ||||||||  |||  ||||||||| |||||||||||||  ||||||||    
T  44373879 atttgatctactctctttactacaaaatctataggtctttactctacatgctcaaaccactcaagcctattttccaccatcttttctactttaggtgcta 44373780  T
Q  174 ccacaactttcttattaatattttcatttctaatc 208  Q
    |  ||||| ||    ||||||||||||||||||||    
T  44373779 ctccaactctcactctaatattttcatttctaatc 44373745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 18752098 - 18752155
Alignment:
Q  118 ctacatgtccaaaccacctaagttattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||||||||||||| ||||| ||||||| | || ||||||||||| ||||||||||    
T  18752098 ctacatgtccaaaccatctaagctattttctaccaacttttctactataggtgctacc 18752155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 33511407 - 33511325
Alignment:
Q  127 caaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatcatat 212  Q
    |||||||||||||| |||||| |||||| |||||||| | ||||| |||| ||||| |||    |||||||||||||||||||||||    
T  33511407 caaaccacctaagtctatttttcatcattttttctaccataggtgttaccccaactctct----aatattttcatttctaatcatat 33511325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 41444548 - 41444612
Alignment:
Q  118 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    |||||||||||||||||||||   || |||||| |||||||||||||| |||||||||| |||||    
T  41444548 ctacatgtccaaaccacctaaacctagtttccaccatcttttctactataggtgctaccccaact 41444612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 13171879 - 13171962
Alignment:
Q  126 ccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttattaatattttcatttctaatc 208  Q
    ||||||||||||||  ||||||||| |||||||||||||| ||||||| || ||||| |||   |||| || ||||||||||||    
T  13171879 ccaaaccacctaagcatattttccaccatcttttctactataggtgcttccccaactctctctctaatcttgtcatttctaatc 13171962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 41971991 - 41972046
Alignment:
Q  109 gtcttcacactacatgtccaaaccacct-aagttattttccatcatcttttctact 163  Q
    |||||| | ||||||||||||||||||| || |||||||||| |||||||||||||    
T  41971991 gtcttctctctacatgtccaaaccacctaaacttattttccaccatcttttctact 41972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 45419297 - 45419239
Alignment:
Q  118 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| ||||||||||||||| ||||||  | |||||||||||||| ||||||||||    
T  45419297 ctacatgcccaaaccacctaagtctattttataccatcttttctactataggtgctacc 45419239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 10824335 - 10824477
Alignment:
Q  68 tatccttcatttgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaa 165  Q
    |||||| |||||||||||| |||| ||||||| |||| ||  |||||  | ||| ||  ||||||||||||||  ||||||| | |||||||||||||      
T  10824335 tatcctccatttgatctactctccatactacaaaatctatgagtcttttctctaaatacccaaaccacctaagcctattttcgaccatcttttctacttt 10824434  T
Q  166 aggtgctaccacaactttcttattaatattttcatttctaatcatat 212  Q
    ||||||| || ||||| |||    |||||||| ||||||||||||||    
T  10824435 aggtgctgcctcaactctct----aatatttttatttctaatcatat 10824477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 32043676 - 32043560
Alignment:
Q  92 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaactttcttatta 190  Q
    |||||||  ||||| |||||||| | ||||||| |||||||||| |||| || |||| | |||||||| ||||| ||||| |||| ||||| |||   ||    
T  32043676 tactacaacatccacaggtcttctctctacatggccaaaccaccaaagtctagtttctaccatcttttgtactataggtgataccccaactctctctcta 32043577  T
Q  191 atattttcatttctaat 207  Q
    || || |||||||||||    
T  32043576 atgttgtcatttctaat 32043560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 35643814 - 35643870
Alignment:
Q  109 gtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctacta 164  Q
    |||||| | ||||||| ||||||||||||||  ||||||||| ||||||||||||||    
T  35643814 gtcttctctctacatgcccaaaccacctaagcatattttccaccatcttttctacta 35643870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 39953438 - 39953506
Alignment:
Q  71 ccttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaa 138  Q
    ||||||| |||||||| ||||| |||||||||||||||||||  | | ||||||| | |||||||||||    
T  39953438 ccttcatctgatctactctccttactacataatccataggtcacctctctacatgcctaaaccacctaa 39953506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 48736077 - 48736185
Alignment:
Q  75 catttgatctaccctccta-ctacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgct 172  Q
    |||||||||||| |||||| |||||||||||| |||||||| | |||||||  |||||||||||||| || ||||   |||||||||||||  |||||||    
T  48736077 catttgatctactctcctaactacataatccacaggtcttcgctctacatgagcaaaccacctaagtctagtttctcccatcttttctactgtaggtgct 48736176  T
Q  173 accacaact 181  Q
    ||| |||||    
T  48736177 accccaact 48736185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 181
Target Start/End: Original strand, 36514389 - 36514493
Alignment:
Q  79 tgatctaccctcc-tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacca 176  Q
    |||||||| |||| ||||||| |||||| | ||| || | ||||||| ||||||||||||||| || |||| | |||||||||||||| ||||||||||     
T  36514389 tgatctactctccatactacagaatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactataggtgctaccc 36514488  T
Q  177 caact 181  Q
    |||||    
T  36514489 caact 36514493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 36101964 - 36102045
Alignment:
Q  95 tacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    |||| |||| |||||||||| | ||||||  ||||||||||||||  ||||||||| ||||||||||| || ||||||||||    
T  36101964 tacaaaatctataggtcttctctctacatccccaaaccacctaagcctattttccaacatcttttctattataggtgctacc 36102045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 7189448 - 7189512
Alignment:
Q  118 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||| |||||||||||||| |||||||| | |||||||||||||| |||||| ||| |||||    
T  7189448 ctacatgcccaaaccacctaagcttattttctaccatcttttctactataggtgcgaccccaact 7189512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 42187556 - 42187472
Alignment:
Q  92 tactacataatccataggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||||||||| | ||| |||| |  |||||| ||||||||||||||  ||||||||| ||||||||||| || ||||||||||    
T  42187556 tactacataatctacaggccttctctttacatgcccaaaccacctaagcctattttccaccatcttttctattataggtgctacc 42187472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 26742118 - 26742176
Alignment:
Q  118 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    |||||||| ||||||||||||   ||||||||| |||||||||||||| ||||||||||    
T  26742118 ctacatgttcaaaccacctaatcctattttccaccatcttttctactataggtgctacc 26742176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 40169709 - 40169651
Alignment:
Q  118 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| ||||||||||||||  ||||||||| |||||||||||||| | ||||||||    
T  40169709 ctacatgcccaaaccacctaagcctattttccaccatcttttctactataagtgctacc 40169651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 47848732 - 47848670
Alignment:
Q  120 acatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||| ||||||||||||||  ||||||||| |||||||||||||| ||| |||||| |||||    
T  47848732 acatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctaccccaact 47848670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 16013371 - 16013326
Alignment:
Q  95 tacataatccataggtcttcacactacatgtccaaaccacctaagt 140  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||    
T  16013371 tacataatccacaggtcttctcactacatgcccaaatcacctaagt 16013326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 12966129 - 12966025
Alignment:
Q  72 cttcatttgatctaccctcct-actacataatccataggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggt 169  Q
    ||||| ||||||||| ||||| |||||| |||  |  ||||||| | ||||||| ||||||||||||||  || |||||| |||||||||| ||| ||||    
T  12966129 cttcacttgatctactctccttactacagaatttacgggtcttctctctacatgcccaaaccacctaagcatagtttccaccatcttttcttctataggt 12966030  T
Q  170 gctac 174  Q
    |||||    
T  12966029 gctac 12966025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 27893770 - 27893834
Alignment:
Q  118 ctacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    |||||||| |||||||||||||  ||||||||| ||||| |||||||| ||||| |||| |||||    
T  27893770 ctacatgttcaaaccacctaagcctattttccaccatctattctactataggtgttacctcaact 27893834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 38920854 - 38920790
Alignment:
Q  118 ctacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    ||||||| ||||||||| ||||  || |||||| |||||||||||||| |||||||||| |||||    
T  38920854 ctacatgcccaaaccacttaagcctagtttccaccatcttttctactataggtgctaccccaact 38920790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 43281744 - 43281676
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  43281744 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 43281676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 45836692 - 45836760
Alignment:
Q  108 ggtcttcacactacatgtccaaaccacctaag-ttattttccatcatcttttctactaaaggtgctacc 175  Q
    ||||||| | |||||||||||||||| |||||  ||||||| | || ||||||||||| ||||||||||    
T  45836692 ggtcttctctctacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacc 45836760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 47236274 - 47236238
Alignment:
Q  129 aaccacctaagt-tattttccatcatcttttctacta 164  Q
    |||||||||||| ||||||||||||||||||||||||    
T  47236274 aaccacctaagtctattttccatcatcttttctacta 47236238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 44079 - 44154
Alignment:
Q  107 aggtcttcacactacatgtccaaaccacctaagt-tattttccatcatcttttctactaaaggtgctaccacaact 181  Q
    |||||||| | ||||||| ||||||||||||||  ||||||||  |||||||||||||| |||||||||| |||||    
T  44079 aggtcttctctctacatgcccaaaccacctaagcctattttccgccatcttttctactataggtgctaccccaact 44154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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