View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0527_low_22 (Length: 252)
Name: NF0527_low_22
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0527_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 6498625 - 6498498
Alignment:
| Q |
13 |
aatataggacttctaactcacctcacacttaccattacactaaagtaccaaaatacacctaaggtaaacaagaatttcttcatgagtatattaaatacaa |
112 |
Q |
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| T |
6498625 |
aatataggacttctaaatcacctcacacttaccattacactaaagtaccaaaatacacctaa-gtaaacaagtatttcttcatgagtatattaaatacaa |
6498527 |
T |
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| Q |
113 |
gaataacacatattagttacttaaagata |
141 |
Q |
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| T |
6498526 |
gaataacatatattagttacttaaagata |
6498498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 159 - 252
Target Start/End: Complemental strand, 6498510 - 6498417
Alignment:
| Q |
159 |
ttacttaaagataatacatgaacaacataaataaataataacagactagcttcaactaatcaactgatttcaaaggaagatttgttggtaagtt |
252 |
Q |
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| T |
6498510 |
ttacttaaagataatacattaacaacataaaaaaataataacagactagcttcaactaataaactgatttcaaaggaagatttgttggtaagtt |
6498417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 6460121 - 6460186
Alignment:
| Q |
79 |
aacaagaatttcttcatgagtatattaaatac---aagaataacacatattagttacttaaagata |
141 |
Q |
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| T |
6460121 |
aacaagaatttattcatgaatatatgaaatactacaagaataacacatattagttacttaaagata |
6460186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 6460200 - 6460262
Alignment:
| Q |
189 |
ataaataataacagactagcttcaactaatcaactgatttcaaaggaagatttgttggtaagtt |
252 |
Q |
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| T |
6460200 |
ataaataataacaaactagcttcagctaatcaacatatttcaaaggaaga-tggttggtaagtt |
6460262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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