View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0527_low_25 (Length: 251)
Name: NF0527_low_25
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0527_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 29336269 - 29336420
Alignment:
| Q |
77 |
caatcaactttgaaatttcaataaaagactattttttactacaactaataatttattcatctgaaagttnnnnnnngaaatca-----atgtcatttatc |
171 |
Q |
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| T |
29336269 |
caatcaactttgaattttcaataaaagactattttttactgcaactaataatttattcatctgaaagttagaaaaagaaatcaaatgtatgtcatttatc |
29336368 |
T |
|
| Q |
172 |
atcatttgannnnnnnnctcaagttttaattattattttttgaattattaat |
223 |
Q |
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| T |
29336369 |
atcatttgattttttttctcaagttttaattattattttttgaattattaat |
29336420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 27751576 - 27751511
Alignment:
| Q |
79 |
atcaactttgaaatttcaataaaagactattttttactacaactaataatttattcatctgaaagtt |
145 |
Q |
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|||||||||||| ||||||| ||||||| |||||||||| | | |||||||||||||||| |||||| |
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| T |
27751576 |
atcaactttgaattttcaatgaaagact-ttttttactatatcaaataatttattcatcttaaagtt |
27751511 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 13768269 - 13768210
Alignment:
| Q |
79 |
atcaactttgaaatttcaataaaagactattttttactacaactaataatttattcatct |
138 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
13768269 |
atcaactatgaattttcaataaaagactattttttactacatcaaataatttattcatct |
13768210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 34856078 - 34856143
Alignment:
| Q |
79 |
atcaactttgaaatttcaataaaagactattttttactacaactaataatttattcatctgaaagtt |
145 |
Q |
| |
|
|||||||||||| ||||||| |||||| | ||||||||||| | ||||||||||| |||| |||||| |
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| T |
34856078 |
atcaactttgaattttcaatgaaagac-aatttttactacatcaaataatttattaatcttaaagtt |
34856143 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 25187805 - 25187871
Alignment:
| Q |
79 |
atcaactttgaaatttcaataaaagactattttttactacaactaataatttattcatctgaaagtt |
145 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||| | |||||||||||||||| |||||| |
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| T |
25187805 |
atcaactatgaattttcaatgaaagactattttttactacatcaaataatttattcatcttaaagtt |
25187871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 18634216 - 18634160
Alignment:
| Q |
85 |
tttgaaatttcaataaaagactattttttactacaactaataatttattcatctgaaa |
142 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||| |
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|
| T |
18634216 |
tttgaattttcaataaaagactattttt-actacaacaaataatttattcatttgaaa |
18634160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 27741043 - 27741104
Alignment:
| Q |
77 |
caatcaactttgaaatttcaataaaagactattttttactacaactaataatttattcatct |
138 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||||||||||| | ||||||||||| |||| |
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|
| T |
27741043 |
caatcaactttaaattttcaatgaaagactattttttactacatcaaataatttatttatct |
27741104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 14500653 - 14500710
Alignment:
| Q |
79 |
atcaactttgaaatttcaataaaagactattttttactacaactaataatttattcat |
136 |
Q |
| |
|
|||||||||||| ||||||| | ||| ||||||||| |||| | |||||||||||||| |
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| T |
14500653 |
atcaactttgaattttcaatgacagattattttttagtacatcaaataatttattcat |
14500710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 145
Target Start/End: Complemental strand, 8516193 - 8516150
Alignment:
| Q |
102 |
agactattttttactacaactaataatttattcatctgaaagtt |
145 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| |||||| |
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|
| T |
8516193 |
agactattttttactacatcaaataatttattcatcttaaagtt |
8516150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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