View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0527_low_5 (Length: 447)
Name: NF0527_low_5
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0527_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 29102478 - 29102114
Alignment:
| Q |
1 |
ctcttattgttatgtaattttctttagtcaatgttcaaaactaaggtcaaaaatgaattttgaaacctctatcttttctgtgcatgtattgatgaaagat |
100 |
Q |
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| T |
29102478 |
ctcttattgttatgtaattttctttagtcaatgttcaaaacaaaggtcaaaaatgaattttgaaacctctatcttttctgtgcatgtattgatgaaagat |
29102379 |
T |
|
| Q |
101 |
atgtcacacaatgtcactttttataaatcattcaaaatacttgattttaatcctaacttataaaagtcacagataaaaatgattgtgattgtttgaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29102378 |
atgtcacacaatgtcactttttataaatcattcaaaatacttgattttaatcctaacttataaaagtcacagataaaaatgattgtgattgtttgaaaat |
29102279 |
T |
|
| Q |
201 |
gtatataaaaattaaactcgtgtcatatacatgtttgagtgtaatattatacctggcaagtcccatggttcacacttgtagagatcaacttcagggatga |
300 |
Q |
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| T |
29102278 |
gtatataaaaattaaactcatgtcatatacatgtttgagtgtaatattatacctggcaagtcccatggttcacacttgtagagatcaacttcagggatga |
29102179 |
T |
|
| Q |
301 |
tctccaactcaatcctacggccattaatctttcttttgagataataagaaacaagttcttcatct |
365 |
Q |
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| T |
29102178 |
tctccaactcaatcctacggccattaatctttcttttgaggtaataagaaacaagttcttcatct |
29102114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 365
Target Start/End: Original strand, 32791098 - 32791213
Alignment:
| Q |
250 |
tacctggcaagtcccatggttcacacttgtagagatcaacttcagggatgatctccaactcaatcctacggccattaatctttcttttgagataataaga |
349 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||| || ||||||||||||| || || |||||||||| |
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| T |
32791098 |
tacctggcaagtcccacggttcacacttatagagatcaacttcagctatgatctccaattcaatcttatggccattaatcttcctatttagataataagc |
32791197 |
T |
|
| Q |
350 |
aacaagttcttcatct |
365 |
Q |
| |
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|||||||||||||||| |
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| T |
32791198 |
aacaagttcttcatct |
32791213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 32897437 - 32897404
Alignment:
| Q |
261 |
tcccatggttcacacttgtagagatcaacttcag |
294 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
32897437 |
tcccatggttcacacttgttgagatcaacttcag |
32897404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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