View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0527_low_8 (Length: 392)
Name: NF0527_low_8
Description: NF0527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0527_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 379
Target Start/End: Original strand, 5511351 - 5511700
Alignment:
| Q |
30 |
ggtgtgactagttcaaccggtaaatctaattaatatgcttaaaacattatactataaagaagtggtttaccctaaagtagaatttttatctttctatcaa |
129 |
Q |
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| T |
5511351 |
ggtgtgactagttcaaccggtaaatctaattaatatgcttaaaacattatactataaaggagtggtttaccctaaagtagaatttttatctttctatcaa |
5511450 |
T |
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| Q |
130 |
aagnnnnnnnnctgagaatttctatctatctactactattatacagcattgaagcaataatgtcaatttgtcaaaatgacccgtgggctataaactctgg |
229 |
Q |
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| T |
5511451 |
aagaaaaaaaactgagaatttctatctatctactactattatacagcattgaagcaataatgtcaatttgtcaaaatgacccgtgggctataaactctgg |
5511550 |
T |
|
| Q |
230 |
cattcatagtataattttgtcttcataaacaaatcaggtctaacatcatagttagctattgttggaatgttggtcagttttaataatggacaaaactaag |
329 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5511551 |
cattcatagtataattttgtcttcataaaaaaatcaggtctaacatcatagttagctattgttggaatgttggtcagttttaataatggacaaaactaag |
5511650 |
T |
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| Q |
330 |
gnnnnnnnngctgacagtaatggacaaacaaggttaggtaccccaactct |
379 |
Q |
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| T |
5511651 |
gtttttgttgctgacagtaatggacaaacaaggttaggtaccccaactct |
5511700 |
T |
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