View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_high_19 (Length: 355)
Name: NF0529_high_19
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 61 - 342
Target Start/End: Original strand, 37626940 - 37627221
Alignment:
| Q |
61 |
caaattcaaatgatgtatgccaagaatgcaacaatttccctgagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagtt |
160 |
Q |
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| T |
37626940 |
caaattcaaatgatgtatgccaagaatgcaacaatttcccttagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagtt |
37627039 |
T |
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| Q |
161 |
gggacttattgaaagactaagttttgcaagagataggccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgt |
260 |
Q |
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| T |
37627040 |
gggacttattgaaagactaagttttgcaagagatagaccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgt |
37627139 |
T |
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| Q |
261 |
attgaacttacaaaaaccatttgcattttggatgttattgatgacatctttgacaattatggtacattagaggatcttgttc |
342 |
Q |
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| T |
37627140 |
attgaacttacaaaaaccatttgcattttggatgttattgatgacatctttgacaattatggtacattagaggatcttgttc |
37627221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 103 - 342
Target Start/End: Original strand, 37618569 - 37618807
Alignment:
| Q |
103 |
agaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagataggccaac |
202 |
Q |
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| T |
37618569 |
agaaatgctacatttcataactagtttatttgattt-gtttaggtggtggaaagagttgggacttgttgaaaaacttggttttgcaagagatagaccaac |
37618667 |
T |
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| Q |
203 |
agagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgat |
302 |
Q |
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| T |
37618668 |
agagtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgcatagaacttacaaaaaccatatgtattttgctagtaatggat |
37618767 |
T |
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| Q |
303 |
gacatctttgacaattatggtacattagaggatcttgttc |
342 |
Q |
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| T |
37618768 |
gatatctttgacacttatggaacattagatgaacttgttc |
37618807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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