View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0529_high_2 (Length: 557)

Name: NF0529_high_2
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0529_high_2
NF0529_high_2
[»] chr1 (2 HSPs)
chr1 (158-547)||(28498302-28498691)
chr1 (1-104)||(28498738-28498841)


Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 158 - 547
Target Start/End: Complemental strand, 28498691 - 28498302
Alignment:
Q  158 ttgtgacttctcatgaagttgtacctgtaaggccactgtgacctaaggcagaggtattgatcactcgttctttttaggagaaggatggtgcaatgtatca 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28498691 ttgtgacttctcatgaagttgtacctgtaaggccactgtgacctaaggcagaggtattgatcactcgttctttttaggagaaggatggtgcaatgtatca 28498592  T
Q  258 acggtccccactatggtccaatattgtgggttctacaccatgacccctgacaaagacagaggtatcacggacggtcctatcactttgcatagggaaaccc 357  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28498591 acggtccccactatggtccaatattttgggtcccacaccatgacccctgacaaagacagaggtatcacggacggtcctatcactttgcatagggaaaccc 28498492  T
Q  358 tccaaaaatggaccccacattaatatattatacatctcatcagtgtccgtgttgtctgtgactctgatctcacctttgatttaatctctcgcatgctnnn 457  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  28498491 tccaaaaatggaacccacattaatatattatacatctcatcagtgtccgtgttgtctgtgactctgatctcacctttgatttaatctctcgcatgctaaa 28498392  T
Q  458 nnnnggatattttctctcatcactgtaattatggcttaatcattctacacctgataaaagaatctaataaaggtaaaccacctttctctg 547  Q
        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28498391 aaaaggatattttctctcattactgtaattatggcttaatcattctacacctgataaaagaatctaataaaggtaaaccacttttctctg 28498302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 28498841 - 28498738
Alignment:
Q  1 catttctacacatcaatgtcctttttatacacaacgagatagtgtatttactcttcaaccacatgcttcataaaattcagacattattactctagtgatg 100  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  28498841 catttctacacatcaatgtcctttatatacagaacgagatagtgtatttactcttcaaccacatgcttcaaagaattcagacattattactctagtgatg 28498742  T
Q  101 atag 104  Q
    ||||    
T  28498741 atag 28498738  T

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