View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_high_30 (Length: 284)
Name: NF0529_high_30
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 34555299 - 34555044
Alignment:
| Q |
1 |
caacacagcatcacttgtctcgcttggattccagcagctactctcaaaataaattgtggttctcttaagcacttttccactatttaaaatgtaacttata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34555299 |
caacacagcatcacttgtctcgcttggattccagcagctactctcaaaataaattgtggttctcttaagcacttttccactatttaaaatgtaacttata |
34555200 |
T |
|
| Q |
101 |
agttcaaactcttcatccgtgccttcataatttctgaatataaaagtagtaaggtgtgatgaaagacagctaggaactattgttggttgtctccattcaa |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34555199 |
agttcaaactcttcatccgtgccttcataatctctgaatataaaagtagtaaggtgtgatgaaagacagctaggaactattgttggttgtctccattcaa |
34555100 |
T |
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| Q |
201 |
tttcattatcgcatagttcatcaacctgtcaagtgaggtcacaacacaactataat |
256 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34555099 |
tttcattatcacatagttcatcaacctgtcaagtgaggtcacaacacaactataat |
34555044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 256
Target Start/End: Complemental strand, 36284430 - 36284180
Alignment:
| Q |
3 |
acacagcatcacttgtctcgcttggattccagcagctactctcaaaataaattgtggttctcttaagcacttttccactatttaaaatgtaacttataag |
102 |
Q |
| |
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|||||||||| |||| ||||||||| |||| |||||||| | |||||||||||||| |||| ||||||||||||||| || |||||||| |||||||| |
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| T |
36284430 |
acacagcatctcttgcctcgcttgg-ttcc--cagctacttccgaaataaattgtggtcctctcaagcacttttccactcttcaaaatgtaccttataag |
36284334 |
T |
|
| Q |
103 |
ttcaaactcttcatccgtgccttcataatttctgaatataaaagtagtaaggtgtgatgaaagacagctaggaactattgttggttgtctccattcaatt |
202 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
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| T |
36284333 |
ttcaaactcttcatccgtgccttcataatctctgaatatgaaagtagtaaggtgtgatgaaagacagctaggaactattgttggttctgcccatttaatt |
36284234 |
T |
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| Q |
203 |
tcattatcgcatagttcatcaacctgtcaagtgaggtcacaacacaactataat |
256 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||| |||||| ||| ||||||| |
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| T |
36284233 |
tcattatcgcataggtcatcaacctgtcaaaagagatcacaaaacatctataat |
36284180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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