View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_high_41 (Length: 254)
Name: NF0529_high_41
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 18107632 - 18107415
Alignment:
| Q |
24 |
caatatatattcacactta----gattttaataaagtaaacttattttaatccttacttgtctgagtttggattaactatactttgaccaaaatgttttc |
119 |
Q |
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| T |
18107632 |
caatatatattcacacttacttagattttaataaagtaaacttattttaat----acttgtctgagtttggattaactatactttgaccaaaatgttttc |
18107537 |
T |
|
| Q |
120 |
acataaggctatggaattttgtaagagaaaactcgacatgtagtttgaggggccaaattaaggtatggaacaaacataaaagaggcatgtaggtaaataa |
219 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18107536 |
acataaggctatgaaattttgtaagagaaaactcgacatgtagtttgaggggccaaattaaggtatggaacaaacataaaagaggcatgtaggtaaataa |
18107437 |
T |
|
| Q |
220 |
atgaatttgaatagtcgtagta |
241 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
18107436 |
atgaatttgaatagtcgtagta |
18107415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 3000825 - 3000608
Alignment:
| Q |
24 |
caatatatattcacactta----gattttaataaagtaaacttattttaatccttacttgtctgagtttggattaactatactttgaccaaaatgttttc |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3000825 |
caatatatattcacacttacttagattttaataaagtaaacttattttaat----acttgtctgagtttggattaactatactttgaccaaaatgttttc |
3000730 |
T |
|
| Q |
120 |
acataaggctatggaattttgtaagagaaaactcgacatgtagtttgaggggccaaattaaggtatggaacaaacataaaagaggcatgtaggtaaataa |
219 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3000729 |
acataaggctatgaaattttgtaagagaaaactcgacatgtagtttgaggggccaaattaaggtatggaacaaacataaaagaggcatgtaggtaaataa |
3000630 |
T |
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| Q |
220 |
atgaatttgaatagtcgtagta |
241 |
Q |
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|||||||||||||||||||||| |
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|
| T |
3000629 |
atgaatttgaatagtcgtagta |
3000608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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