View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0529_high_42 (Length: 252)
Name: NF0529_high_42
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_42 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 50275022 - 50274801
Alignment:
| Q |
31 |
ttatgttgtgacagtgctacgcttgaaactaattgccatagatatatcattccaactcttatatggtaaattgacacatgaaattttaatatctgtactt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275022 |
ttatgttgtgacagtgctacgcttgaaactaattgccatagatatatcattccaactcttatatggtaaattgacacatgaaattttaatatctgtactt |
50274923 |
T |
|
| Q |
131 |
ctatgtgtcttttctttctttcaatcaagaatatgtacaaattaaattgcattaacattattatctgtacatagatatcacgacagtttttcacaaccta |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50274922 |
ctatgtgtcttttctttctttcaatcaagaatatgtacaaattaaattgcattaacattattatctgtacatagatatcacgagagtttttcacaaccta |
50274823 |
T |
|
| Q |
231 |
ttctcccttattttcatgcact |
252 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50274822 |
ttctcccttattttcatgcact |
50274801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 50279046 - 50278825
Alignment:
| Q |
31 |
ttatgttgtgacagtgctacgcttgaaactaattgccatagatatatcattccaactcttatatggtaaattgacacatgaaattttaatatctgtactt |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279046 |
ttatgttgtgacagtgctacgcttgaaactaattgccatagatatatcattccaactcttatatggtaaattgacacatgaaattttaatatctgtactt |
50278947 |
T |
|
| Q |
131 |
ctatgtgtcttttctttctttcaatcaagaatatgtacaaattaaattgcattaacattattatctgtacatagatatcacgacagtttttcacaaccta |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50278946 |
ctatgtgtcttttctttctttcaatcaagaatatgtacaaattaaattgcattaacattattatctgtacatagatatcacgagagtttttcacaaccta |
50278847 |
T |
|
| Q |
231 |
ttctcccttattttcatgcact |
252 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50278846 |
ttctcccttattttcatgcact |
50278825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1339 times since January 2019
Visitors: 3667