View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_high_43 (Length: 251)
Name: NF0529_high_43
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_43 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 12955820 - 12956057
Alignment:
| Q |
13 |
aatatagagagaaccgtaaaaccaacccatattcctttaatttattaacgctcaattttaccttcctaacattttaactccaaaaataaattaatctatt |
112 |
Q |
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| T |
12955820 |
aatatagagagaaccgtaaaaccaacccatattcctttaatttattaacgctcaattttaccttcctaacattttaactccaaaaataaattaaactatt |
12955919 |
T |
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| Q |
113 |
gtacttataaacctctcatttcacttgagcctcatcacacaaaattaaaccacaagaaacctcaaaatctaattaaccacaaaattctcaataagtctcc |
212 |
Q |
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| T |
12955920 |
gtacttataaacctctcatttcacttgtgcctcatcacacaaaattaaaccacaagaaacctcaaaatctaattaaccac-aaattctcaataagtctcc |
12956018 |
T |
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| Q |
213 |
aaaacatggtttctttttcatcatcttgtttgtctcttt |
251 |
Q |
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| T |
12956019 |
aaaacatggtttctttttcatcatcttgtttgtctcttt |
12956057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 14242849 - 14242698
Alignment:
| Q |
13 |
aatatagagagaaccgtaaaaccaacccatat--tcctttaatttattaacgctcaattttaccttcctaacattttaactccaaaaataaattaatct- |
109 |
Q |
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| T |
14242849 |
aatatagagagtgccgtaaaaccaacccatatcatcctttagttcattaacgctcaattttaccttcctaatatcttaactccaaaaataaattaatctc |
14242750 |
T |
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| Q |
110 |
attgtacttataaacc-tctcatttcacttgagcctcatcacacaaaattaa |
160 |
Q |
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| T |
14242749 |
cttgcatttataaaccttgtcatttctcttgtgtctcataacataaaattaa |
14242698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 14242522 - 14242480
Alignment:
| Q |
153 |
aaaattaaaccacaagaaacctcaaaatctaattaaccacaaa |
195 |
Q |
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| T |
14242522 |
aaaattaaactacaagaaacctcaaaatctaattaaccacaaa |
14242480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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