View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0529_high_46 (Length: 251)
Name: NF0529_high_46
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_46 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 56200291 - 56200531
Alignment:
| Q |
1 |
gcattgttcaagtcaaataagaaggagagcttatttgcagatagggtatgctcagcattatattcnnnnnnncatttccaccttatggatggaaaaaaca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
56200291 |
gcattgttcaagtcaaacaagaaggagagcttatttgcagatagggtatgctcagcattatattctttttttcatttccaccttatggaaggaaaaaaca |
56200390 |
T |
|
| Q |
101 |
acaatatgatgtgaaccttatcaatttatttcccaagtttatgattttatatacttatgtaggtgtttgacttgtttgatacaaagcacaatgggatact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56200391 |
acaatatgatgtgaaccttatcaatttatttcccaagtttatgattttatatacttatgtaggtgtttgacttgtttgatacaaagcacaatgggatact |
56200490 |
T |
|
| Q |
201 |
tgattttgaagagtttgcacgtgctctttctgtttttcatc |
241 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
56200491 |
tgattttgaagagtttgcccgtgctctttctgtttttcatc |
56200531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 42161828 - 42161910
Alignment:
| Q |
159 |
gtaggtgtttgacttgtttgatacaaagcacaatgggatacttgattttgaagagtttgcacgtgctctttctgtttttcatc |
241 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| || || || |||||||| |||| |
|
|
| T |
42161828 |
gtaggtatttgatttgtttgatacaaagcacaatgggatacttggtttcgaagagtttgcccgcgccctctctgttttccatc |
42161910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 24092658 - 24092739
Alignment:
| Q |
160 |
taggtgtttgacttgtttgatacaaagcacaatgggatacttgattttgaagagtttgcacgtgctctttctgtttttcatc |
241 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||||| | |||||||||||| || ||||| || || ||||| |||| |
|
|
| T |
24092658 |
taggtatttgatttatttgatacaaagcacaatgggatactaggttttgaagagttcgctcgtgccctatccgttttccatc |
24092739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1578 times since January 2019
Visitors: 3672