View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0529_high_48 (Length: 248)
Name: NF0529_high_48
Description: NF0529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0529_high_48 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 43 - 248
Target Start/End: Complemental strand, 25739853 - 25739647
Alignment:
| Q |
43 |
atatattttaaattattaaacttgtgccgcatgaaggttgaacgtatgtcaactccagattactaggcccatactttatttaccttccggccaaaataac |
142 |
Q |
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| T |
25739853 |
atatattttaaattattaaacttgtgccgcatgaaggttgaacgtatgtcaactccagattactatgcccatactttatttaccttccgaccaaaataac |
25739754 |
T |
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| Q |
143 |
ttgtttta-nnnnnnnaaaattaatataacttaatctacaaaaagattactaaaaaatatccacaaaaacaccaaggacttcaaatttctcaataataaa |
241 |
Q |
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| T |
25739753 |
ttgttttatttttttaaaaattaatataacttaatctacaaaaagattactaaaaaatatccacaaaaacaccaagtacttcaaatttctcaataataaa |
25739654 |
T |
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| Q |
242 |
gggaaaa |
248 |
Q |
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||||||| |
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| T |
25739653 |
gggaaaa |
25739647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 25743333 - 25743261
Alignment:
| Q |
170 |
acttaatctacaaaaagattact-aaaaaatatccacaaaaacaccaaggacttcaaatttctcaataataaa |
241 |
Q |
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||||||||||||||||||||| | |||||| ||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
25743333 |
acttaatctacaaaaagattattgaaaaaaaatccaaaaaaacaccaagtacttcaaatttctcaataataaa |
25743261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 37174322 - 37174278
Alignment:
| Q |
7 |
gatatatcgttaagtattcacatatatccacaactaatatatttt |
51 |
Q |
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| T |
37174322 |
gatatattgttaagtattcacatatatccacaactaatatatttt |
37174278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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